Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_P21
(438 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05) 48 3e-06
SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019) 33 0.14
SB_56871| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_39013| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_38778| Best HMM Match : HRM (HMM E-Value=4.6) 28 3.9
SB_58280| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09) 27 6.8
SB_49775| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0) 27 8.9
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 27 8.9
>SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05)
Length = 332
Score = 48.0 bits (109), Expect = 3e-06
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Frame = -2
Query: 425 LQFYVPMEIVWRNTKDHVAQKYHNITEAVMRXXXXXXXXXXXXXLPSLEQVIGLEGAFFY 246
LQFYVP+EI+ + V++KY + + R +P LE VI + G+
Sbjct: 209 LQFYVPVEILLPSVLKRVSKKYQTVADLGFRTSLVLVTVVLAACVPRLEDVIAVIGSLAS 268
Query: 245 SFLGLIAPSILDLIFKWERGLGRNNW-ILFKDLFLIFFGCFVLVAGXTQSXRERMR 81
+ L + P+ +D+ R + W +L KD+ +I G V G S + +R
Sbjct: 269 TTLCMTFPAAMDIASL--RMSSKLTWYLLLKDIVIILIGITGSVTGLYMSMAKLIR 322
>SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 39.5 bits (88), Expect = 0.001
Identities = 27/105 (25%), Positives = 45/105 (42%)
Frame = -2
Query: 425 LQFYVPMEIVWRNTKDHVAQKYHNITEAVMRXXXXXXXXXXXXXLPSLEQVIGLEGAFFY 246
L F PMEI+ + V +++H I + R +P L I L G+
Sbjct: 232 LAFLRPMEIMQPPIRQCVGERFHGIADYGFRTLLVCVTCALALGIPQLSNFISLVGSIGS 291
Query: 245 SFLGLIAPSILDLIFKWERGLGRNNWILFKDLFLIFFGCFVLVAG 111
S L L+ P + L+ + + ++ KD+F++ FG V G
Sbjct: 292 SALALVFPITIHLLTLYSTHQLTIS-VIIKDVFILAFGLLGSVVG 335
>SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019)
Length = 1097
Score = 32.7 bits (71), Expect = 0.14
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ K SYRPR + L++ S+ P HT
Sbjct: 197 SYRPCHADLVKQTLSYRPRHTDLVIQTLSYRPRHT 231
Score = 30.3 bits (65), Expect = 0.73
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ SYRPR + L++ S+ P HT
Sbjct: 281 SYRPCHADLVIQTLSYRPRHTDLVIQTLSYRPCHT 315
Score = 30.3 bits (65), Expect = 0.73
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ SYRPR + L++ S+ P HT
Sbjct: 691 SYRPCHTDLVIQTLSYRPRHTDLVIQTLSYRPCHT 725
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 315 YCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
Y C +D+ +SYRPR + L++ + P HT
Sbjct: 141 YRPCHTDLVMQTSSYRPRHTDLVIQTLLYRPCHT 174
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ +SYRP + L++ S+ P HT
Sbjct: 357 SYRPCHTDLVIQTSSYRPCHTDLVIQTLSYRPCHT 391
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ SYRP + L++ S+ P HT
Sbjct: 593 SYRPCNTDLVIQTLSYRPCHTDLVIQTLSYRPCHT 627
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ +SYRP + L++ S+ P HT
Sbjct: 621 SYRPCHTDLVIQTSSYRPCHTDLVIQTLSYRPCHT 655
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ +SYRP + L++ S+ P HT
Sbjct: 733 SYRPCHTDLVIQTSSYRPCHTDLVIQTLSYRPCHT 767
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ +SYRP + L++ S+ P HT
Sbjct: 789 SYRPCHADLVIQTSSYRPCHTDLVIQTLSYRPCHT 823
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ +SYRP + L++ S+ P HT
Sbjct: 267 SYRPCHTDLVIQTSSYRPCHADLVIQTLSYRPRHT 301
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ SYRP + L++ S+ P HT
Sbjct: 635 SYRPCHTDLVIQTLSYRPCHTDLVIQTLSYRPCHT 669
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ SYRP + L++ S+ P HT
Sbjct: 649 SYRPCHTDLVIQTLSYRPCHTDLVIQTLSYRPCHT 683
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ SYRP + L++ S+ P HT
Sbjct: 663 SYRPCHTDLVIQTLSYRPCHTDLVIQTLSYRPCHT 697
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ SYRP + L++ S+ P HT
Sbjct: 747 SYRPCHTDLVIQTLSYRPCHTDLVIQTLSYRPCHT 781
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ +SYRP + L++ S+ P HT
Sbjct: 239 SYRPCHTDLFIQTSSYRPCHTDLVIQTSSYRPCHT 273
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ SYRP + L++ S+ P HT
Sbjct: 607 SYRPCHTDLVIQTLSYRPCHTDLVIQTSSYRPCHT 641
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ SYRP + L++ S+ P HT
Sbjct: 719 SYRPCHTDLVIQTLSYRPCHTDLVIQTSSYRPCHT 753
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ SYRP + L++ S+ P HT
Sbjct: 775 SYRPCHTDLVIQTLSYRPCHADLVIQTSSYRPCHT 809
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ +SY+ R + L++ S+ P HT
Sbjct: 967 SYRPCYADLVMQTSSYKRRHTDLVIQTLSYRPCHT 1001
>SB_56871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 318 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 214
SY C +D+ + YRPR + L++ S+ P HT
Sbjct: 90 SYRPCYTDLVMQTSLYRPRHTDLVIQTLSYRPCHT 124
>SB_39013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 183 KTSFPLENEIQYGRGYETKEGVEESSF 263
KTS+ +NE+Q G E KE +E++S+
Sbjct: 19 KTSWNNDNELQNGEQSEEKENLEQNSY 45
>SB_38778| Best HMM Match : HRM (HMM E-Value=4.6)
Length = 331
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 216 TGSHFQVGTRSWKKQLDFI*GFISNIFWLFRTSGRXHTKXQRK 88
TG QVG + W +S+I W+ +TS R RK
Sbjct: 252 TGLRHQVGVQDWSPTSSGCPRLVSDIKWVSKTSLRHQPATSRK 294
>SB_58280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 282 KTW*RRCRNHSKSGKNRSHDCFRDVMV 362
K W R CRNH+++ ++C R V
Sbjct: 305 KPWQRSCRNHARADDYTDYNCKRKASV 331
>SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)
Length = 820
Score = 27.1 bits (57), Expect = 6.8
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 152 LFLIFFGCFVLVAGXTQSXRERMRTRAQEV--R*EATFDLN 36
L L GCFVLV G T + M+ A +V + ATF+ N
Sbjct: 10 LVLGLCGCFVLVLGHTNTQNCNMQLLASQVSAQLHATFESN 50
>SB_49775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 26.6 bits (56), Expect = 8.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 3 NIYKSY*LVXSIQIKSRFSSHFLRPRPHSFSXALCXTGH*YETA 134
N+YK LV S++ RFS H H+F+ L H TA
Sbjct: 83 NLYKLLILVPSLEFHYRFSPHCGTDTLHTFNRTLPQEDHQVLTA 126
>SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)
Length = 926
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 213 QYGRGYETKEGVEESSF*AYNLFK 284
Q G Y T +GVEE+ AY +FK
Sbjct: 141 QLGNMYRTGQGVEENPEKAYQIFK 164
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 428 TLQFYVPMEIVWRNTKDHVAQKYHNITEAV 339
TLQ V + + NT+D +A YH T AV
Sbjct: 3547 TLQQGVVVRLRNTNTRDFLANSYHKFTSAV 3576
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,407,415
Number of Sequences: 59808
Number of extensions: 221469
Number of successful extensions: 489
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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