Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P21
         (438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   2.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   2.6  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   7.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -2

Query: 170 WILFKDLFLIFFGCFVLVAGXTQSXRERMRTRAQEV 63
           W+ F  LFLI +  + ++     +  + MR +A+++
Sbjct: 223 WVYFVPLFLIIYSYWFIIQA-VAAHEKNMREQAKKM 257


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -2

Query: 170 WILFKDLFLIFFGCFVLVAGXTQSXRERMRTRAQEV 63
           W+ F  LFLI +  + ++     +  + MR +A+++
Sbjct: 99  WVYFVPLFLIIYSYWFIIQA-VAAHEKNMREQAKKM 133


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 150 ISNIFWLF 127
           +SN+FWLF
Sbjct: 34  LSNLFWLF 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,769
Number of Sequences: 438
Number of extensions: 1984
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)