Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P21
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53440.1 68414.m06057 leucine-rich repeat family protein / pr...    29   1.4  
At1g53430.1 68414.m06056 leucine-rich repeat family protein / pr...    29   1.8  
At3g60220.1 68416.m06730 zinc finger (C3HC4-type RING finger) fa...    28   3.2  
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t...    27   7.3  

>At1g53440.1 68414.m06057 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1035

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 288 KS*TSYRPRRSFLLLLPWSHSPVHTGS 208
           KS T+YRP+  F+ LL W++     GS
Sbjct: 866 KSNTNYRPKEEFIYLLDWAYVLQEQGS 892


>At1g53430.1 68414.m06056 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1030

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 288 KS*TSYRPRRSFLLLLPWSHSPVHTGS 208
           KS T+YRP+  F+ LL W++     GS
Sbjct: 860 KSNTNYRPKEEFVYLLDWAYVLQEQGS 886


>At3g60220.1 68416.m06730 zinc finger (C3HC4-type RING finger)
           family protein (ATL4) contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 334

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 195 GTRSWKKQ-LDFI*GFISNIFWLFRTSGRXHTKXQRKNED 79
           G+RSW K  +D +   IS+    FR+SGR  T   R++E+
Sbjct: 270 GSRSWLKDYVDRLSRGISSRAMSFRSSGRFFTGSSRRSEE 309


>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
           GB:AAC39463 from [Zea mays], PF00076 RNA recognition
           motif (2 copies)
          Length = 615

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 351 HGSSHESGFCRSYCGCGSDVT 289
           H +SHE GF  S   CG  +T
Sbjct: 588 HDNSHEDGFSGSSVDCGRSIT 608


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,698,113
Number of Sequences: 28952
Number of extensions: 161621
Number of successful extensions: 323
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)