Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P20
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    31   0.21 
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    31   0.21 
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    29   0.63 
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    29   0.63 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    29   0.83 
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    28   1.1  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       28   1.5  
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    27   1.9  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    27   1.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.5  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.4  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   3.4  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    27   3.4  
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    26   4.4  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.8  

>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = -3

Query: 530 PTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKV 351
           PT KK + ++ K  +  ++ +E    N  + VK   + L+  ++EK P W   +     +
Sbjct: 531 PTAKKNNSFKPKLFRRSRELSEKLCNNWSERVKSPSYQLKVREREKLPAWESRRKIMDAI 590

Query: 350 KEEEV 336
           +  +V
Sbjct: 591 QHSQV 595


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 17/70 (24%), Positives = 36/70 (51%)
 Frame = -3

Query: 542 KFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPG 363
           K  K +++++ +  ++ A +++K  +    ++     KK+    ++D+  K D  K K G
Sbjct: 49  KMAKRSVEELKRSADEEASVKRKEKKSKHEHKKH---KKDKPSADKDRISKKDKKKSKKG 105

Query: 362 DQKVKEEEVE 333
             K KEE +E
Sbjct: 106 KSKTKEESIE 115


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 461  NFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQ 357
            +FRNQ+K   ++   L E+ KE    W +G   DQ
Sbjct: 1070 DFRNQIKSQTERILVLREKKKEDPISWMEGTMEDQ 1104


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 503 ENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQK--VKEEEVE 333
           +N F    K   E NF + +K   K +FT      E+K +  K  P +QK  +K+++ E
Sbjct: 254 DNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQKKDE 312


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
 Frame = -3

Query: 674 KRVCKDYHXRIARLEDXKF--DLEYIVKRK-DMEISDLNSQVNDLRGKFVKPTLKKVSKY 504
           +RV + Y  ++A+    K   ++E   KRK + E+  +  +      K      K+  + 
Sbjct: 554 QRVLQAYREKVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQ 613

Query: 503 ENKFAKLQKKAAE--FNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEEEVE 333
             +  +L ++AA+     + Q +  KK+E    + ++EKK    + +  ++K K++E E
Sbjct: 614 RREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKERE 672


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
 Frame = -3

Query: 596  RKDMEISDLNSQVNDLRGKFVKPTLKKVS-KYENKFAKLQKKAAEFNFRNQLKVVKKKEF 420
            R ++E  +L  QVN+L+G  V P     S ++ N    ++ KA     ++Q+   K K F
Sbjct: 1423 RLNLEKHNLEKQVNELKGAEVSPQPTGQSLQHVNLAHAIELKA----LKDQINSEKAKMF 1478

Query: 419  TLEEEDKEKKPDWSKGKPGDQKVKEEEV 336
            +++ + ++++ +  K     +KV ++ +
Sbjct: 1479 SVQVQYEKREQELQKRIASLEKVNKDSL 1506


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -3

Query: 563 QVNDLRGKFVKPTLKKVSK-YENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKP 387
           Q N +RG+ +   + K+ K Y+N+   ++K +         +++    +      + + P
Sbjct: 418 QGNFVRGQKLHLEISKIQKKYQNQIENMKKGSHVTKSNQYSEMIGNLPYPTSSRKRTRSP 477

Query: 386 DWSKGKPGDQK 354
             SKGK  D+K
Sbjct: 478 LMSKGKSYDRK 488


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 515 VSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEE-DKEKK 390
           + K +NK  + Q+     + +N+ K+ ++KE   EEE D EKK
Sbjct: 1   MGKIKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKK 43


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 24  QKHYSMWSINLFFFLRVRVNSIWSLHDIR*VMPVGRHKKTGN 149
           Q HY + S++L+  +   + S+W+L D+    P   +K   N
Sbjct: 296 QYHYVVQSLHLWLLIMGEIFSLWALSDLELTNPDMEYKLIDN 337


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -3

Query: 599  KRKDMEISDLNSQVNDLRGKFVKPTLKK-VSKYENKFAKLQKKAAEFNFRNQLKVVKKKE 423
            K+ D  I+   S +    G+ + P L + +  +E++F   Q+  AE+  + Q  + + + 
Sbjct: 1368 KQTDTGITHFRSGMTT-NGEHLIPNLYRYIQPWESEFIDSQRVWAEYAMKRQEALQQNRR 1426

Query: 422  FTLEEEDKEKKPDWSKGKP 366
             TLE    + +  W +G P
Sbjct: 1427 LTLE----DLEDSWDRGIP 1441


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
 Frame = -3

Query: 635 LEDXKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLK-KVSKYENKFAKLQKK-AAEF 462
           LE     L  + ++KD +I +L  ++NDL   +   TLK      E K   + K+ AA  
Sbjct: 149 LEKQVKTLHDLNEQKDKKIKELKERINDLTYDY--ETLKANADDSEGKQTLVSKREAALE 206

Query: 461 NFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEEEVE 333
            F+++L ++++ E    E     K D  K +  D + +  +VE
Sbjct: 207 EFQSKL-LIRENEINKRELKMNGKEDDLKKREKDLENRLLKVE 248


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -3

Query: 674  KRVCKDYHXRIARLEDXKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYE 501
            +R+C+     +   +   +DL++       E S L+ QVNDL  +  K T +K+S+ +
Sbjct: 897  QRLCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQ-AKITQRKLSEVQ 953


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 437 VKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEEEVE 333
           ++  E+ L++E+KE+K    K +   +K KE+E E
Sbjct: 275 IESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKE 309


>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 479 KKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQ 357
           KK    + R +++    K     ++DK  KP+   GKP D+
Sbjct: 22  KKPLPLHMRTKIREHLNKSDPTVKDDKSAKPELPFGKPADR 62


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 54  LFFFLRVRVNSIWSLHDIR*VMPVGRHKKTGNLGQVT 164
           LFF + ++  S  SL  +  +MPV +H +    G +T
Sbjct: 99  LFFKMGIKFLSFASLLGVLIIMPVNKHFRGDAFGNIT 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,439
Number of Sequences: 5004
Number of extensions: 47938
Number of successful extensions: 179
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)