Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P18
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    28   0.92 
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    28   0.92 
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   3.7  
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    25   4.9  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    25   6.5  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   8.5  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    25   8.5  

>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 12/56 (21%), Positives = 29/56 (51%)
 Frame = +3

Query: 159 EKCIIVEN*VCGSFIICHLILFPQDSFVLFFSAHFFIISKFPGHFTGNSILPAHSN 326
           ++  ++E       ++ H+  F +D  +++ S+ F  ++    + TG+SI+P   N
Sbjct: 236 DRDFVIEFMFWAGMVMLHISRFAED-LIIYSSSEFGFVTLSDAYSTGSSIMPQKKN 290


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 25   NFHLHLVPVESRARSPDAAVRDTM 96
            NFH  LV + SRAR PD   R T+
Sbjct: 1056 NFHTQLVSLISRARDPDYYSRPTI 1079


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 75  CSRERHNVINCRCECTQNVETAQDDNSQEK 164
           C    +  INCRC  ++  E+A  D S  K
Sbjct: 29  CVSNENGCINCRCSPSEPHESANVDESVNK 58


>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/52 (21%), Positives = 27/52 (51%)
 Frame = +3

Query: 171 IVEN*VCGSFIICHLILFPQDSFVLFFSAHFFIISKFPGHFTGNSILPAHSN 326
           ++E     S ++ H+    +D  +++ ++ F  ++    + TG+SI+P   N
Sbjct: 239 VIEFMFWASMVMTHISRLAED-LIIYSTSEFNFVTLSDAYSTGSSIMPQKKN 289


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 115 SHLQLITLCLSRLHLDFLLYSPQE 44
           SH+Q+I+  +S+ H  F + +P E
Sbjct: 34  SHIQVISKSISKRHARFTILTPSE 57


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -1

Query: 164 LFLTIVILSSFYILRTFT 111
           +F  I+++S+FY L++FT
Sbjct: 26  IFFAIILISNFYGLKSFT 43


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 393 YQDKPNNCGAYFQ*MYPPEQPN 458
           YQD P + GAYF+ M   ++ N
Sbjct: 124 YQDLPRDYGAYFRKMIQIDEAN 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,692
Number of Sequences: 5004
Number of extensions: 37981
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)