Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P18
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0446 + 3462820-3464265                                           29   2.8  
12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910           27   6.5  
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486...    27   6.5  
10_08_0121 + 14977645-14977734,14978975-14979062,14979271-14979617     27   8.6  
08_01_0166 - 1365203-1365571,1365602-1365695,1365794-1367220           27   8.6  

>11_01_0446 + 3462820-3464265
          Length = 481

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -1

Query: 464 IPIWLFWRVHSLEISTAIIWFILVTAAS 381
           +P+WL W +H    ++ I+W+ + ++A+
Sbjct: 148 VPLWLMWSIH----ASRIVWYYITSSAA 171


>12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910
          Length = 447

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = -2

Query: 256 AEKKRTKESCG---KRMRWQIMKLPH 188
           A   RT +  G   KRMRWQ+ + PH
Sbjct: 155 ANPHRTDDDAGPSRKRMRWQVKRTPH 180


>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
            29048829-29049210,29049370-29049513,29049593-29049777,
            29049925-29050051,29050603-29050676,29051071-29051147,
            29051256-29051292,29051453-29051619,29051800-29051983,
            29052053-29052130,29052451-29052570,29052648-29052707,
            29053057-29053179,29053848-29053941,29054019-29054197,
            29054737-29055039,29055373-29055474,29055553-29055693,
            29055831-29055995,29056168-29056344,29056432-29056554,
            29057787-29057867,29057983-29058099,29058214-29058386,
            29058846-29058923,29058994-29059141,29059755-29059877,
            29060015-29060071,29060145-29060255,29060382-29060573,
            29060690-29060863,29061263-29061373,29061462-29061531,
            29061734-29061812,29061898-29062000,29062086-29062256,
            29062348-29062470,29062548-29062661,29062935-29063041,
            29063117-29063168,29063245-29063351,29063589-29063703,
            29063819-29063929,29064016-29064153,29064230-29064352,
            29064535-29064606,29064774-29064886,29066780-29067110,
            29067199-29067381,29068669-29068863,29068943-29069110,
            29069208-29069340,29069511-29069595,29069726-29069765
          Length = 2591

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +3

Query: 141  QDDNSQEKCIIVEN*VCGSFIICHLILFPQDSFVLFFSAHFFIISKFPGH 290
            +D N +    + E  V G  + C     P DSF   F   + ++S  P +
Sbjct: 953  EDSNKKSSPGLFEQIVTGLTVACKAGPLPADSFTFVFPVLYHVLSTVPAY 1002


>10_08_0121 + 14977645-14977734,14978975-14979062,14979271-14979617
          Length = 174

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +2

Query: 269 HQQVSWT-FHGQQHPPCA 319
           H+QVS T + G +HPPCA
Sbjct: 77  HKQVSSTGYDGNKHPPCA 94


>08_01_0166 - 1365203-1365571,1365602-1365695,1365794-1367220
          Length = 629

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +2

Query: 269 HQQVSWTFHG--QQHPPCAQQHGAST 340
           HQ  SW F+   QQ+PP A QH  +T
Sbjct: 262 HQLHSWYFNSSFQQNPPPAVQHSPTT 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,255,109
Number of Sequences: 37544
Number of extensions: 256105
Number of successful extensions: 594
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)