Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P18
         (503 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               98   4e-21
SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)                    27   6.6  
SB_35674| Best HMM Match : SH2 (HMM E-Value=0)                         27   6.6  

>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 97.9 bits (233), Expect = 4e-21
 Identities = 44/90 (48%), Positives = 62/90 (68%)
 Frame = -1

Query: 503 SALFYGXAFIVSAIPIWLFWRVHSLEISTAIIWFILVTAASTWLLALAYRNTKFQLKHXX 324
           S LFY  A IVSAIP+WLFWR+H ++  ++ I F ++T  STWL+A AY+N KFQLKH  
Sbjct: 27  SILFYANALIVSAIPLWLFWRIHQMDPYSSGILFAVMTLVSTWLVAFAYKNVKFQLKHKI 86

Query: 323 XXXXXXXXXXEMSRKLADDKKMSRKEKDER 234
                     E++++L  +KK++R+EKDER
Sbjct: 87  AQRRDAAITKEVNQELDPNKKLTRQEKDER 116



 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 60   SKKSRCSRERHNVINCRCECTQNVETAQDDNSQEK 164
            S+K +C  E+      +CE  + VE ++D+N +EK
Sbjct: 1565 SEKEKCESEKE-----KCESEKKVEESKDENPEEK 1594


>SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 27  LPSSLGSCGE*S--KKSRCSRERHNVINCRCECTQ 125
           LPS   +CG  +  ++SRCS  R +V  CR  C +
Sbjct: 470 LPSKRSTCGTCAPRRQSRCSCVRSSVAGCRTACVR 504


>SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1457

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 30  PSSLGSCGE*SKKSRCSRERHNVINCRCECT 122
           PS +G CG  +  SR    RH +I  RC  T
Sbjct: 149 PSPIGGCGGRAAYSRNHHRRHVIIISRCIIT 179


>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
          Length = 871

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 60  SKKSRCSRERHNVINCRCECTQNVETAQDDNSQEK 164
           S+K +C  E+      +CE  + VE ++D+N +EK
Sbjct: 144 SEKEKCESEKE-----KCESEKKVEESKDENPEEK 173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,181,308
Number of Sequences: 59808
Number of extensions: 306210
Number of successful extensions: 748
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)