Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_P18
(503 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT006669-1|AAP35315.1| 185|Homo sapiens signal sequence recepto... 180 2e-45
BC017203-1|AAH17203.1| 185|Homo sapiens signal sequence recepto... 180 2e-45
AF110647-1|AAD48587.1| 185|Homo sapiens translocon-associated p... 180 2e-45
AF087907-1|AAP97205.1| 185|Homo sapiens SSR gamma protein. 180 2e-45
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 32 1.3
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 32 1.3
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 32 1.3
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 32 1.3
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 32 1.3
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 32 1.3
AY339211-1|AAQ02646.1| 532|Homo sapiens nonintegrin platelet re... 31 1.7
AF053402-1|AAC35282.1| 238|Homo sapiens erythrocyte K-Cl cotran... 29 7.0
>BT006669-1|AAP35315.1| 185|Homo sapiens signal sequence receptor,
gamma (translocon-associated protein gamma) protein.
Length = 185
Score = 180 bits (439), Expect = 2e-45
Identities = 84/140 (60%), Positives = 109/140 (77%), Gaps = 2/140 (1%)
Frame = -1
Query: 503 SALFYGXAFIVSAIPIWLFWRVHSLEISTAIIWFILVTAASTWLLALAYRNTKFQLKHXX 324
SALF+G AFIVSAIPIWL+WR+ +++ + + + ++T ST+L+A AY+N KF LKH
Sbjct: 29 SALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKV 88
Query: 323 XXXXXXXXXXEMSRKL--ADDKKMSRKEKDERILWKKNEVADYEATTYSIFYNNALFLTI 150
E++RKL AD++KMSRKEKDERILWKKNEVADYEATT+SIFYNN LFL +
Sbjct: 89 AQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVV 148
Query: 149 VILSSFYILRTFTPTVNYIV 90
VI++SF+IL+ F PTVNYI+
Sbjct: 149 VIVASFFILKNFNPTVNYIL 168
>BC017203-1|AAH17203.1| 185|Homo sapiens signal sequence receptor,
gamma (translocon-associated protein gamma) protein.
Length = 185
Score = 180 bits (439), Expect = 2e-45
Identities = 84/140 (60%), Positives = 109/140 (77%), Gaps = 2/140 (1%)
Frame = -1
Query: 503 SALFYGXAFIVSAIPIWLFWRVHSLEISTAIIWFILVTAASTWLLALAYRNTKFQLKHXX 324
SALF+G AFIVSAIPIWL+WR+ +++ + + + ++T ST+L+A AY+N KF LKH
Sbjct: 29 SALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKV 88
Query: 323 XXXXXXXXXXEMSRKL--ADDKKMSRKEKDERILWKKNEVADYEATTYSIFYNNALFLTI 150
E++RKL AD++KMSRKEKDERILWKKNEVADYEATT+SIFYNN LFL +
Sbjct: 89 AQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVV 148
Query: 149 VILSSFYILRTFTPTVNYIV 90
VI++SF+IL+ F PTVNYI+
Sbjct: 149 VIVASFFILKNFNPTVNYIL 168
>AF110647-1|AAD48587.1| 185|Homo sapiens translocon-associated
protein gamma subunit protein.
Length = 185
Score = 180 bits (439), Expect = 2e-45
Identities = 84/140 (60%), Positives = 109/140 (77%), Gaps = 2/140 (1%)
Frame = -1
Query: 503 SALFYGXAFIVSAIPIWLFWRVHSLEISTAIIWFILVTAASTWLLALAYRNTKFQLKHXX 324
SALF+G AFIVSAIPIWL+WR+ +++ + + + ++T ST+L+A AY+N KF LKH
Sbjct: 29 SALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKV 88
Query: 323 XXXXXXXXXXEMSRKL--ADDKKMSRKEKDERILWKKNEVADYEATTYSIFYNNALFLTI 150
E++RKL AD++KMSRKEKDERILWKKNEVADYEATT+SIFYNN LFL +
Sbjct: 89 AQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVV 148
Query: 149 VILSSFYILRTFTPTVNYIV 90
VI++SF+IL+ F PTVNYI+
Sbjct: 149 VIVASFFILKNFNPTVNYIL 168
>AF087907-1|AAP97205.1| 185|Homo sapiens SSR gamma protein.
Length = 185
Score = 180 bits (439), Expect = 2e-45
Identities = 84/140 (60%), Positives = 109/140 (77%), Gaps = 2/140 (1%)
Frame = -1
Query: 503 SALFYGXAFIVSAIPIWLFWRVHSLEISTAIIWFILVTAASTWLLALAYRNTKFQLKHXX 324
SALF+G AFIVSAIPIWL+WR+ +++ + + + ++T ST+L+A AY+N KF LKH
Sbjct: 29 SALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKV 88
Query: 323 XXXXXXXXXXEMSRKL--ADDKKMSRKEKDERILWKKNEVADYEATTYSIFYNNALFLTI 150
E++RKL AD++KMSRKEKDERILWKKNEVADYEATT+SIFYNN LFL +
Sbjct: 89 AQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVV 148
Query: 149 VILSSFYILRTFTPTVNYIV 90
VI++SF+IL+ F PTVNYI+
Sbjct: 149 VIVASFFILKNFNPTVNYIL 168
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
protein.
Length = 5202
Score = 31.9 bits (69), Expect = 1.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 236 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 96
R++W + T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.9 bits (69), Expect = 1.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 236 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 96
R++W + T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.9 bits (69), Expect = 1.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 236 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 96
R++W + T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.9 bits (69), Expect = 1.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 236 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 96
R++W + T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.9 bits (69), Expect = 1.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 236 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 96
R++W + T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.9 bits (69), Expect = 1.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 236 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 96
R++W + T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AY339211-1|AAQ02646.1| 532|Homo sapiens nonintegrin platelet
receptor for type I collagen protein.
Length = 532
Score = 31.5 bits (68), Expect = 1.7
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 63 KKSRCSRERHNVINCRCECTQNVETAQD--DNSQEKCIIVEN*VCGSFIICHLILFPQDS 236
K C H+ NCR CT E + D DNS +C ++ N V CH+ + +
Sbjct: 341 KVGGCRSSLHHSNNCRHCCTI-CEWSCDGLDNSTNECFVLHNWVFLKISQCHVDHIQEST 399
Query: 237 FVL 245
FVL
Sbjct: 400 FVL 402
>AF053402-1|AAC35282.1| 238|Homo sapiens erythrocyte K-Cl
cotransporter protein.
Length = 238
Score = 29.5 bits (63), Expect = 7.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 467 AIPIWLFWRVHSLEISTAIIWFILVTAASTW 375
+IP+ FW L T+ +WF LV A W
Sbjct: 171 SIPVGPFWPSLQLPSCTSAVWFSLVPALRVW 201
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,231,767
Number of Sequences: 237096
Number of extensions: 1550146
Number of successful extensions: 6609
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6605
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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