Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P17
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    28   1.1  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    28   1.1  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.5  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.0  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   3.4  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    26   4.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.0  

>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 503 ALPRPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVR 378
           ++ +  EP P S A  +P + + EALAE  +       P  R
Sbjct: 58  SIQKKKEPSPASSASASPVKKSAEALAERSNSSMGTFDPPPR 99


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 482 PKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATLP 360
           P P + A+  P   T +ALA    + NQ   PQV  T   P
Sbjct: 600 PTPRTAAQEDPAEETTDALASAEGENNQ--MPQVLETEAAP 638


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 6   VFLIFACVCVCVCLFHNYSNSHIFDYIKKHSYDIERL 116
           +FL   CV     L +N SN+ +   IKK+S+  ERL
Sbjct: 268 LFLSILCVGYYHHLLNNPSNTELQSLIKKYSFYSERL 304


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -2

Query: 497 PRPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRS 375
           P P EP P  P  G P    NE + ET   K   LS +  S
Sbjct: 124 PLPDEPVPEEPLPGEP-PLPNEPVPETNCHKESPLSDETVS 163


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 186 WLSYCSSTTCNSMLDCRF*VYEYLTSQCHSC 94
           W+S      CNS  D +   Y +L  +C+SC
Sbjct: 342 WISTIRCNDCNSRCDTK---YHFLGHKCNSC 369


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 179 LNHRPIVITCENKFSKSWL 235
           LN + +V+ CE  F K+WL
Sbjct: 161 LNFKKLVLECECAFQKTWL 179


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 9   FLIFACVCVCVCLFHNYSNSHI 74
           FL F  +CVCV L   +S SH+
Sbjct: 155 FLFFFFLCVCVFLSFLFSLSHL 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,834
Number of Sequences: 5004
Number of extensions: 35771
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)