Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_P17
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90... 30 1.5
07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896 29 2.7
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 29 3.5
07_03_0649 - 20260501-20260512,20260620-20260833,20261207-202614... 29 3.5
07_03_0644 - 20242283-20242294,20242402-20242615,20242989-202432... 29 3.5
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 28 6.1
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 28 6.1
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 27 8.1
08_01_0917 + 9033451-9036136,9036373-9036722 27 8.1
04_04_0543 - 26112461-26112667 27 8.1
03_05_0208 + 22006032-22006673,22006695-22007078 27 8.1
03_05_0141 - 21210176-21212140 27 8.1
>04_01_0083 +
904473-905167,905247-905347,905902-905994,907322-907968
Length = 511
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 497 PRPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATLPVRD 351
P+ + PT+P+RGAP S ++ +W Q LS + +TA V D
Sbjct: 89 PKKAAAAPTTPSRGAPSASA-APVSSSWEQLKSLLSCR-SATAAARVHD 135
>07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896
Length = 260
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 494 RPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQV 381
RPS P PT+PA G C + + S QKL V
Sbjct: 147 RPSSPAPTNPADGPRCDAATSSHRLLPSALQQKLEEHV 184
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 419 SPPEPRSLIGRVRREQERLALAQKV-LVEPLTPPSAGRIHLNSL 547
S P+P SL RR LA A+ + LVEP P S+ R H++SL
Sbjct: 59 SLPDPSSL---ERRRDALLAYARALSLVEPRFPISSDRAHVHSL 99
>07_03_0649 -
20260501-20260512,20260620-20260833,20261207-20261429,
20261706-20261931,20262051-20262494
Length = 372
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 395 VFGSFATTSPPEPRSLIGR-VRREQERLALAQKVLVEPLTPPSA 523
+F + A + P P SL R + R+Q+ L LA +V PPSA
Sbjct: 12 LFAAAAAAAGPRPLSLSARPLYRQQDPLFLASRVASPAPPPPSA 55
>07_03_0644 -
20242283-20242294,20242402-20242615,20242989-20243211,
20243488-20243713,20243833-20244276
Length = 372
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 395 VFGSFATTSPPEPRSLIGR-VRREQERLALAQKVLVEPLTPPSA 523
+F + A + P P SL R + R+Q+ L LA +V PPSA
Sbjct: 12 LFAAAAAAAGPRPLSLSARPLYRQQDPLFLASRVASPAPPPPSA 55
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 449 CRSTNEALAETWSQKNQKLS 390
CR+ E L ETWSQK+ +S
Sbjct: 3165 CRAQLEQLQETWSQKDMTIS 3184
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -2
Query: 533 EFGRPMGV*VALPRPSEPKPTSPARGAPCRSTNEALAETWSQKNQKL-SPQVRSTATLPV 357
E R + +A R +P+PT P + A T +Q + + Q + +T PV
Sbjct: 493 EVARKVDERMAAHRSHDPQPTIPPAMVSPSGNRSSCASTGQVGSQSMDAMQTQDESTCPV 552
Query: 356 RDDVSLLMLHSIHVYFK 306
DD++ +H+ FK
Sbjct: 553 -DDITQRTPCELHIPFK 568
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -2
Query: 533 EFGRPMGV*VALPRPSEPKPTSPARGAPCRSTNEALAETWSQKNQKL-SPQVRSTATLPV 357
E R + +A R +P+PT P + A T +Q + + Q + +T PV
Sbjct: 380 EVARKVDERMAAHRSHDPQPTIPPAMVSSSGNRSSCASTGQVGSQSMDAMQTQDESTCPV 439
Query: 356 RDDVSLLMLHSIHVYFK 306
DD++ +H+ +K
Sbjct: 440 -DDITQRTPCELHIPYK 455
>08_01_0917 + 9033451-9036136,9036373-9036722
Length = 1011
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 364 YQYAMTSLY*CYIRFTYTLNNSFGYLTFINSQRVS 260
++ +TSL Y FT TL + G+LT INS VS
Sbjct: 394 WKLKLTSLNLSYNLFTGTLPHDIGWLTRINSIYVS 428
>04_04_0543 - 26112461-26112667
Length = 68
Score = 27.5 bits (58), Expect = 8.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +3
Query: 24 CVCVCVCLFHNYSNSHIFDY 83
C C C+C+ Y + H F++
Sbjct: 39 CDCTCLCMMTEYQDRHSFEF 58
>03_05_0208 + 22006032-22006673,22006695-22007078
Length = 341
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 563 LIRLTIGNLNEFGRPMGV*VALPRPSEPKPTSPARG 456
++RLT+ +E G PM P +P P P +G
Sbjct: 175 VLRLTVTRPDEEGHPMNTPFPDLEPEQPAPREPKKG 210
>03_05_0141 - 21210176-21212140
Length = 654
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 128 CMNI*PLN-VIAVLFNVIEYMAIRIIMKQTHAHTHTSEDEK 9
C +I P V + +F+V M I + KQ HAH+ S EK
Sbjct: 275 CQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSLKSNTEK 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,547,634
Number of Sequences: 37544
Number of extensions: 238016
Number of successful extensions: 913
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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