Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_P17
(576 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 0.85
SB_28804| Best HMM Match : DUF1556 (HMM E-Value=5.1) 29 3.6
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08) 28 4.8
SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7) 28 4.8
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9) 28 6.3
SB_45644| Best HMM Match : zf-HYPF (HMM E-Value=3.7) 27 8.3
SB_41099| Best HMM Match : VWA (HMM E-Value=0) 27 8.3
SB_38437| Best HMM Match : VWA (HMM E-Value=0) 27 8.3
SB_17096| Best HMM Match : Novirhabdo_Nv (HMM E-Value=2.4) 27 8.3
SB_8517| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_2957| Best HMM Match : zf-HYPF (HMM E-Value=3.1) 27 8.3
>SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 989
Score = 25.0 bits (52), Expect(2) = 0.85
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 24 CVCVCVCLFHNYSN 65
CVCVCVC + + N
Sbjct: 85 CVCVCVCGVYYFDN 98
Score = 24.2 bits (50), Expect(2) = 0.85
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3
Query: 15 IFACVCVCVCL 47
+ AC CVCVC+
Sbjct: 80 VCACTCVCVCV 90
>SB_28804| Best HMM Match : DUF1556 (HMM E-Value=5.1)
Length = 259
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 497 PRPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATL 363
P SEP+ SP R +P E+ E S + Q + R + T+
Sbjct: 75 PGESEPERASPGRASPREQARESEPERASPREQARGERARESETV 119
>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
Length = 865
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 494 RPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRS 375
R +PKP SP+RG RS+ + ++ N+ SP+ RS
Sbjct: 162 RDKKPKPESPSRG---RSSRRSRSQERGTSNRSPSPRGRS 198
>SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)
Length = 412
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 497 PRPSEPKPTSPARGAPCR 444
PRPS PKPT P CR
Sbjct: 299 PRPSRPKPTLPPFAEKCR 316
>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1668
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 212 NKFSKSWLHSKNHQKQADTL 271
NK K+W+H ++QK DT+
Sbjct: 1171 NKEHKAWMHKSDYQKNTDTV 1190
>SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9)
Length = 253
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 240 LCNHDLLNLFSHVITIGLWLSYCSSTTCNSMLDCRF*VYEYLTSQC-HSCAF*CN 79
+CNH L +++H +T ++ +T CN L LT+ C H+ CN
Sbjct: 9 MCNHTLATMYNHTLT--TMCNHTLTTMCNHTLTAM--CNHTLTTMCNHTLTTMCN 59
>SB_45644| Best HMM Match : zf-HYPF (HMM E-Value=3.7)
Length = 172
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 441 NERGSGGDVVAKEPKTQPSGSIDRNLT 361
N+ G DV EPK QP +++RN T
Sbjct: 61 NDEYKGPDVFDLEPKLQPFSNMERNST 87
>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
Length = 3373
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 497 PRPSEPKPTSPARG 456
PRP+ PKPT+P +G
Sbjct: 338 PRPTPPKPTAPPKG 351
>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
Length = 3445
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 497 PRPSEPKPTSPARG 456
PRP+ PKPT+P +G
Sbjct: 3239 PRPTPPKPTAPPKG 3252
>SB_17096| Best HMM Match : Novirhabdo_Nv (HMM E-Value=2.4)
Length = 211
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 71 YIRLH*KAQL*H*EVKYSYT*NLQSNIELHVVELQ*LNHRPIVITCENK 217
++ LH +Q H ++ LQSNI HV + + LN+ + IT E +
Sbjct: 65 FLELHIPSQTKHNSIELERV--LQSNIVYHVYDFKPLNYLMLTITKERR 111
>SB_8517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 488 SEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRST 372
+ PKPT+ RG P + N+ A + Q+L +R T
Sbjct: 64 TSPKPTTSKRGTPDTTANQITAMFVKIRKQELIIHIRMT 102
>SB_2957| Best HMM Match : zf-HYPF (HMM E-Value=3.1)
Length = 150
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 441 NERGSGGDVVAKEPKTQPSGSIDRNLT 361
N+ G DV EPK QP +++RN T
Sbjct: 83 NDEYKGPDVFDLEPKLQPFSNMERNST 109
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,796,967
Number of Sequences: 59808
Number of extensions: 276707
Number of successful extensions: 855
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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