Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P17
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-7|CAA96592.1|  140|Caenorhabditis elegans Hypothetical pr...    33   0.11 
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z11505-10|CAA77588.2|  590|Caenorhabditis elegans Hypothetical p...    29   1.8  
Z83233-3|CAB05762.1|   83|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF047656-7|AAC05108.2|  462|Caenorhabditis elegans Ligand-gated ...    29   3.1  
AC006717-1|AAY55883.2|  101|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear recep...    28   4.1  
AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical...    27   7.2  
Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U39742-5|AAK39199.1|  767|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AC006767-1|AAF60573.2|  332|Caenorhabditis elegans Serpentine re...    27   9.5  

>Z72502-7|CAA96592.1|  140|Caenorhabditis elegans Hypothetical
           protein C08B6.10 protein.
          Length = 140

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 500 LPRPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRS 375
           +P P+ P P++P   AP R     +  TW+ + Q+   Q+ S
Sbjct: 27  IPSPANPTPSNPVTAAPIRRQPTVIQTTWAPQIQQPQQQLES 68


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 491 PSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATLPVRDDVS 342
           P+  KP +P+RG P          T +  +   SPQ+  T TLP    V+
Sbjct: 250 PAAKKP-APSRGRPSNKRQTTTTTTTTITSVSKSPQISDTNTLPTLPSVT 298


>Z11505-10|CAA77588.2|  590|Caenorhabditis elegans Hypothetical
           protein F59B2.11 protein.
          Length = 590

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 442 DRQGAPRAGEVGFGSEGLGRATYTPIG 522
           DR+   R+   GFGS G GRA YT  G
Sbjct: 468 DRKSDSRSTSKGFGSGGRGRAEYTEDG 494


>Z83233-3|CAB05762.1|   83|Caenorhabditis elegans Hypothetical
           protein K06B4.3 protein.
          Length = 83

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +3

Query: 6   VFLIFACVCVCVCLF---HNYSNS-HIFDYIKKHS 98
           VF++  C C C CLF   +N++NS + +D I   S
Sbjct: 48  VFIVCCCCCCCGCLFRSNNNFNNSNNSYDNISNDS 82


>AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical
           protein Y50D4C.5 protein.
          Length = 540

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 497 PRPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRST 372
           P PS P PT PA  A  +S  +   E + Q +    P + ST
Sbjct: 346 PTPSTPLPTRPAAAAAQKSVKQ---EVYEQSSSSNCPSISST 384


>AF047656-7|AAC05108.2|  462|Caenorhabditis elegans Ligand-gated ion
           channel protein 6 protein.
          Length = 462

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 104 VIAVLFNVIEYMAIRIIMKQTHAHTHTS 21
           +IA +F V       II++QTH H HTS
Sbjct: 306 IIAEIFVVTAATIASIIIQQTHHHVHTS 333


>AC006717-1|AAY55883.2|  101|Caenorhabditis elegans Hypothetical
           protein Y14H12A.2 protein.
          Length = 101

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 353 DDVSLLMLHSIHVYFK*FIRLFNFH*FSTC-QPVFDDSYYVTTI 225
           DD  +++L+ +H+    F+R+ N   F +C Q  F D+ +  T+
Sbjct: 33  DDDPIILLNCVHLLVLHFVRICNISSFKSCFQTWFSDNCWSCTV 76


>Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical
           protein C06C6.4 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 113 PLNVIAVLFNVIEYMAIRIIMKQTHAHTHTSED 15
           P+N  A +FN IEYMA+ +++    AH + S D
Sbjct: 259 PMN--AKMFNSIEYMALAMLLLFDGAHANISAD 289


>AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-63 protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 113 PLNVIAVLFNVIEYMAIRIIMKQTHAHTHTSED 15
           P+N  A +FN IEYMA+ +++    AH + S D
Sbjct: 261 PMN--AKMFNSIEYMALAMLLLFDGAHANISAD 291


>AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical
           protein Y87G2A.13 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 12  LIFACVCVCVCLFHNYSNSHIFDYIKKHSYD 104
           L + C+C+ VCLF  Y+ S +++YI   + D
Sbjct: 104 LHWLCLCIPVCLF-VYTLSEVYNYIMPDNRD 133


>Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical
           protein F14F7.1 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -2

Query: 545 GNLNEFGRPMGV*VALPRPSEPKPTSPARGAPCRS 441
           G+  + GRP     A PRP  P P  P RGAP  S
Sbjct: 167 GSDGQPGRPATGGGAAPRPGPPGPKGP-RGAPGNS 200


>U39742-5|AAK39199.1|  767|Caenorhabditis elegans Hypothetical
           protein C25F6.4 protein.
          Length = 767

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +3

Query: 6   VFL-IFACV--CVCVCLFHNYSNSHIFDYIKK 92
           +FL IFACV  CV VCL     N  +   +KK
Sbjct: 380 IFLTIFACVAYCVSVCLKRRQKNKSVDSNVKK 411


>AC006767-1|AAF60573.2|  332|Caenorhabditis elegans Serpentine
           receptor, class j protein55 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 6   VFLIFACVCVCVCLFHNYSNSHIFDYIKKHSYDI 107
           VF+++      +C F   +N  I +YI+K  ++I
Sbjct: 137 VFVVYFATWYAICYFPGRANVEIKEYIRKDFFEI 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,014,939
Number of Sequences: 27780
Number of extensions: 212135
Number of successful extensions: 727
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)