Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P17
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family pr...    30   1.3  
At1g80850.1 68414.m09485 methyladenine glycosylase family protei...    29   2.2  
At5g17160.1 68418.m02010 expressed protein                             29   2.9  
At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family pr...    29   2.9  
At5g25490.1 68418.m03033 zinc finger (Ran-binding) family protei...    28   3.9  
At1g53510.1 68414.m06068 mitogen-activated protein kinase, putat...    28   5.1  
At4g17800.1 68417.m02656 DNA-binding protein-related contains Pf...    27   6.8  
At3g13850.1 68416.m01749 LOB domain family protein / lateral org...    27   6.8  
At3g14670.1 68416.m01856 hypothetical protein                          27   9.0  

>At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 307

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
 Frame = +2

Query: 410 ATTSPPEPRSLIGRVRREQ--ERLALAQKVL 496
           ATTSP +P+SL  + RRE+  ERL + Q+++
Sbjct: 204 ATTSPKDPQSLAAKNRRERISERLKVLQELV 234


>At1g80850.1 68414.m09485 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 327

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 513 GVSGSTKTF*AKANLSCSRRTLPINERGSGGDVVAKEPKTQPSGSIDRNLTSTR 352
           G+S  T ++ + A+ SC    L +    SG  V+ +      S S+ RNLT  R
Sbjct: 69  GIS-MTASYSSDASSSCESSPLSMTSTSSGKRVLRRSGSVSSSSSLRRNLTEER 121


>At5g17160.1 68418.m02010 expressed protein
          Length = 569

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 488 SEPKPTSPARGAPCRSTNEALAETWSQKN 402
           +EP+P+S      CRST+++LA    Q+N
Sbjct: 80  AEPQPSSQLVSRSCRSTSKSLAGDMDQEN 108


>At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 298

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
 Frame = +2

Query: 413 TTSPPEPRSLIGRVRREQ--ERLALAQKVL 496
           TTSP +P+SL  + RRE+  ERL + Q+++
Sbjct: 199 TTSPKDPQSLAAKNRRERISERLKILQELV 228


>At5g25490.1 68418.m03033 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 170

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 403 FFCDHVSARASFVDRQGAPRAGEVGFGSEGLG 498
           F C   +A   F+D    PR G  GFG    G
Sbjct: 92  FSCSSAAATTGFMDMNVGPRRGLFGFGGSSSG 123


>At1g53510.1 68414.m06068 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK18) mitogen-activated protein
           kinase (MAPK)(AtMPK18), PMID:12119167
          Length = 603

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -2

Query: 497 PRPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATL 363
           P+P  P         P  +TN+A  ET +  N    PQ+  T  L
Sbjct: 515 PKPQNPVHQFSPTEPPAATTNQADVETMNHPNPYFQPQLPKTDQL 559


>At4g17800.1 68417.m02656 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 292

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 432 GSGGDVVAKEPKTQPSGS 379
           G GGDVV + P+ +P GS
Sbjct: 74  GGGGDVVGRRPRGRPPGS 91


>At3g13850.1 68416.m01749 LOB domain family protein / lateral organ
           boundaries domain family protein (LBD22) identical to
           SP|Q9LRW1 Putative LOB domain protein 22 {Arabidopsis
           thaliana}; similar to lateral organ boundaries (LOB)
           domain-containing proteins from Arabidopsis thaliana
          Length = 268

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 527 GRPMGV*VALPRPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSP 387
           G+P  V    P+P+  KP+S    +   STN+A A    Q+ +K +P
Sbjct: 4   GKPSSVFPLHPKPTPLKPSSSTSSSNNNSTNQACAACKYQR-RKCAP 49


>At3g14670.1 68416.m01856 hypothetical protein
          Length = 232

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -2

Query: 497 PRPSEPKPTSPARGAPCRSTNEALAETWSQKNQK 396
           P+  +PK   P    P R T   L   W Q +Q+
Sbjct: 185 PKEKDPKEKDPKEKDPKRRTRMVLQNPWKQTSQE 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,132,189
Number of Sequences: 28952
Number of extensions: 188106
Number of successful extensions: 617
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)