Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_P15
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0334 + 33208266-33208481,33208789-33208940,33209141-332092... 32 0.33
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947... 31 0.44
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 29 3.1
01_01_0483 - 3550429-3551184 29 3.1
04_04_1681 + 35322992-35323765 28 4.1
06_01_0468 - 3319777-3319779,3319901-3319999,3320547-3320682,332... 27 7.2
04_03_0672 + 18559984-18559986,18560096-18560569,18560666-185608... 27 7.2
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 27 7.2
10_08_0377 + 17343244-17343372,17344316-17344393,17344496-173445... 27 9.5
06_03_1256 + 28787681-28788039,28788430-28788517 27 9.5
02_05_0424 + 28841562-28841569,28841636-28841714,28841826-288418... 27 9.5
>03_06_0334 +
33208266-33208481,33208789-33208940,33209141-33209221,
33209371-33209491
Length = 189
Score = 31.9 bits (69), Expect = 0.33
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +1
Query: 10 SPQPMPQATXPYWT*RFFS*SMGHTRGDPPSPRQVS 117
+P P P T PY RFFS S+ +RG PSP+Q S
Sbjct: 49 TPPPPPPLT-PY---RFFSSSVSESRGTSPSPKQES 80
>09_02_0450 +
9468495-9468528,9468947-9469062,9470031-9470858,
9470955-9471107,9471194-9471604
Length = 513
Score = 31.5 bits (68), Expect = 0.44
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 409 NRFPLLKSLCITISLTVLS-*YGYISFVFCVSHSPAL 516
N F LLK LCIT+S LS Y Y+S V + P+L
Sbjct: 335 NTFLLLKYLCITLSAVTLSPSYDYLSLVSFLDACPSL 371
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = -2
Query: 138 RGGGA---RQGHLPGGRGVAPR 82
RGGG R G PGGRGV PR
Sbjct: 37 RGGGRNGPRGGRFPGGRGVEPR 58
>01_01_0483 - 3550429-3551184
Length = 251
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 165 LPVALDVHVRGGGARQGHLPGGRGVAPRVPH 73
L A+ + GGG R G + GG G+AP PH
Sbjct: 162 LAAAVSAGMYGGGRRLGVIDGG-GIAPPSPH 191
>04_04_1681 + 35322992-35323765
Length = 257
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 212 RNTCQSQLRRTRLGRFFQLHSTFMCAGGEPDKDTCRGDGGSPLVC-PIDYEK 60
R++C S+L + GR S C + D+ CRG G+P C P Y K
Sbjct: 154 RDSCPSELSKKVNGRTVACRSA--CDVFDTDQYCCRGMYGNPSTCQPTFYSK 203
>06_01_0468 -
3319777-3319779,3319901-3319999,3320547-3320682,
3320836-3320982,3321068-3321201
Length = 172
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 256 LPSFPNLSFPQPVAKHLTPAGARSLAGGRHATPTFGAESTGVSRNSR 396
LPSF +LS V++ A RSLAG R +F + TG +R
Sbjct: 37 LPSFHDLSMAGGVSRRWRRAVERSLAGRRRM--SFAGQRTGDDSTAR 81
>04_03_0672 +
18559984-18559986,18560096-18560569,18560666-18560836,
18561494-18561640
Length = 264
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 150 DVHVRGGGARQGHLPGGRGVAPRVPHRL*EESLCP 46
D H R ++Q + GG G APR P+R+ S P
Sbjct: 78 DPHRRHSLSQQREVGGGIGSAPRSPYRMVHGSASP 112
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 230 DVPVVDRNTCQSQLRRTRLG 171
+ PV+ R TC Q+RRT LG
Sbjct: 523 EAPVLRRGTCLEQVRRTDLG 542
>10_08_0377 +
17343244-17343372,17344316-17344393,17344496-17344558,
17344836-17344883,17345203-17345349,17346264-17346395,
17346905-17346945,17347605-17347633,17348969-17349096,
17349919-17349994,17350111-17350231,17350300-17350399,
17350491-17350572,17350664-17350746,17351978-17352088,
17352260-17352311,17352363-17352408,17352652-17352860,
17353128-17353251,17353667-17353741,17353837-17353891,
17354476-17354595,17354670-17354762,17354869-17355014,
17355152-17355329,17356876-17357110,17357824-17357912
Length = 929
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +3
Query: 369 IHWSLEEQQSYVVEQVPLIEVLV 437
IH+++ + + + EQ+PLI+VL+
Sbjct: 228 IHFTVSRESNGITEQLPLIQVLI 250
>06_03_1256 + 28787681-28788039,28788430-28788517
Length = 148
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 152 STFMCAGGEPDKDTCRGDGGSPLVCPIDYEK 60
+ F GG P K+ G GG+P C D +K
Sbjct: 77 TAFDAGGGVPCKEKSGGHGGAPSPCSDDDDK 107
>02_05_0424 +
28841562-28841569,28841636-28841714,28841826-28841894,
28841965-28842054,28842132-28842270,28842523-28842625,
28842708-28842760,28842849-28842915,28843087-28843195,
28843588-28843653,28843740-28843808,28843893-28843959,
28844038-28844154,28844433-28844656,28845083-28845094
Length = 423
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 483 GDISVSRQDSQGNRDTQGL-Q*GEPVLRHSSAVP 385
G +S ++ S + + GL + G PVLRHS ++P
Sbjct: 324 GTLSTTKPHSNASLKSSGLSKTGHPVLRHSRSLP 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,158,332
Number of Sequences: 37544
Number of extensions: 304549
Number of successful extensions: 1228
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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