Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P15
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06740.1 68418.m00762 lectin protein kinase family protein co...    30   1.1  
At3g03940.1 68416.m00412 protein kinase family protein contains ...    29   1.9  
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica...    28   3.4  
At3g49290.1 68416.m05387 expressed protein                             28   3.4  
At3g21290.1 68416.m02690 dentin sialophosphoprotein-related cont...    28   4.5  
At1g54200.1 68414.m06178 expressed protein                             28   4.5  
At1g72330.1 68414.m08367 alanine aminotransferase, putative simi...    27   5.9  
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    27   5.9  
At5g24310.1 68418.m02861 expressed protein strong similarity to ...    27   7.9  

>At5g06740.1 68418.m00762 lectin protein kinase family protein
           contains Legume lectins beta-chain signature,
           PROSITE:PS00307 and Serine/Threonine protein kinases
           active-site signature, PROSITE:PS00108
          Length = 652

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = +1

Query: 118 LSGSPPAHMNVECNWKNRPSRVLLNWLWQVFR 213
           +SG  P+++ V+ N +N  +  ++NWLW+++R
Sbjct: 527 VSGKKPSYVLVKDN-QNNYNNSIVNWLWELYR 557


>At3g03940.1 68416.m00412 protein kinase family protein contains
           Pfam domains, PF00069: Protein kinase domain
          Length = 701

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 195 PVEEDAAGAVLPVALDVHVRGGGARQGHLPGGRGVAPRVP 76
           P+ E A   VLP       RGGG  +G+    +G AP  P
Sbjct: 21  PLVEQAENIVLPPQTATRRRGGGRGRGNAALAKGAAPPRP 60


>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 591

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 177 AGAVLPVALDVHVRGGGARQGHLPGGRGVAPR 82
           AG V+P  L   VR  G+  G   GGR   PR
Sbjct: 532 AGQVVPPTLSALVRSSGSGYGGSGGGRNFRPR 563


>At3g49290.1 68416.m05387 expressed protein
          Length = 312

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 283 PQPVAKHLTPAGARSLAGGRHATPTFGAESTGVSRNSRAMS*NRFPLLKS 432
           P PV K  + + +      R AT +F +      ++ R++S +RFPLL+S
Sbjct: 179 PPPVRKSTSQSSSPRQPPQRSATFSFTSTIPKKEQDKRSVSPHRFPLLRS 228


>At3g21290.1 68416.m02690 dentin sialophosphoprotein-related
           contains weak similarity to Dentin sialophosphoprotein
           precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
          Length = 1192

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 259 PSFPNLSFPQPVAKHLTPAGARSL--AGGRHATPTFGAESTGV 381
           PS    SFP P  +H +P G  S    GG  A P   + ST V
Sbjct: 21  PSRNRNSFPPPTNRHPSPIGRMSSGGGGGGSAAPRQRSNSTSV 63


>At1g54200.1 68414.m06178 expressed protein
          Length = 366

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 525 TEDQSRRMGHAEHEGDISVSRQDSQGNRDTQGLQ*GEPVL-RHSSAVPRDSSGFS 364
           T   S R    ++  D  VS         ++ L+  EPV  +HSS+   DSSGFS
Sbjct: 45  TNSSSMRKTKHQNREDTRVSANRRDDFNRSKNLKTIEPVFFKHSSSSSSDSSGFS 99


>At1g72330.1 68414.m08367 alanine aminotransferase, putative similar
           to alanine aminotransferase 2 SP|P34106 from Panicum
           miliaceum, SP|P52894 from Hordeum vulgare, GI:4730884
           from Oryza sativa
          Length = 540

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +1

Query: 10  SPQPMPQATXPYWT*RFFS*SMGHTRGDPPSPRQVSLSGSPPAHMNVE 153
           SPQP P A+ P    RFFS +   +  D  S   V+L    P  +  E
Sbjct: 29  SPQPRPLASSPPALSRFFSSTSEMSASDSTSSLPVTLDSINPKVLKCE 76


>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +1

Query: 259 PSFPNLSFPQ--PVAKHLTPA-GARSLAG-GRHATPTFGAEST 375
           P+F N SF    P     TPA GA S    G  +TP+FGA ST
Sbjct: 133 PAFGNTSFGSSTPFGATNTPAFGAPSTPSFGATSTPSFGASST 175


>At5g24310.1 68418.m02861 expressed protein strong similarity to
           unknown protein (emb|CAB66408.1)
          Length = 321

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +1

Query: 283 PQPVAKHLTPAGARSLAGGRHATPTFGAESTGVSR--NSRAMS*NRFPLLKSLCITISLT 456
           P PV K +  + ++     R AT +F + +T   +  + RA+S +RFPLL+S  + I  +
Sbjct: 185 PPPVRKPILQSPSQRKPQ-RSATFSFSSIATAPKKEQDKRAVSPHRFPLLRSGSVAIRPS 243

Query: 457 VLS 465
            +S
Sbjct: 244 SIS 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,795,212
Number of Sequences: 28952
Number of extensions: 209574
Number of successful extensions: 627
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)