Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_P14
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 30 0.20
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 30 0.27
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.35
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 28 1.1
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 28 1.1
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 28 1.1
SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr ... 28 1.1
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 28 1.1
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 1.4
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 27 1.4
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 27 1.9
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 27 1.9
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 27 2.5
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 27 2.5
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.5
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 26 3.3
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 26 3.3
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|... 26 3.3
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 26 3.3
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 26 3.3
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 3.3
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 26 4.4
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 26 4.4
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 4.4
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 4.4
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 25 5.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.6
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 25 7.6
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 7.6
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 7.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 7.6
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ... 25 7.6
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 30.3 bits (65), Expect = 0.20
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = -3
Query: 535 KIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTDQGRKGRGEPAEKRRTVNVT 356
++++ A E ++ KD+ + D K T + + TE+N T K + E K R+ +
Sbjct: 429 EMNEASTATSENEDLKDDLSLADLSSKKTANSQATENNNTPSKAKVKAE--SKVRSKAKS 486
Query: 355 EELRPVLQAPSAKD 314
++ R L + + KD
Sbjct: 487 DKSRAKLSSDTNKD 500
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 29.9 bits (64), Expect = 0.27
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = -3
Query: 538 KKIDKKRK--ANKERKNSKDETEIRDKKRK 455
KK +K+RK A KE+K K++ E ++KK+K
Sbjct: 443 KKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/49 (22%), Positives = 29/49 (59%)
Frame = -3
Query: 526 KKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTDQGRKGRGEPAE 380
KKRK+ + + +DE +++KR+ + ++ ++ K + +K + + +E
Sbjct: 426 KKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKKSE 474
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -3
Query: 553 NENIQKKIDKKRKANKERKNSKDETEIRDKKRK 455
+E+ K ++KR+ + +K K++ E ++KK K
Sbjct: 437 DEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEK 469
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.5 bits (63), Expect = 0.35
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = -3
Query: 532 IDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTDQGRKGRGEPAEKRRT 368
I+KK+K + + K + E+ ++KK K D K K+++ G P +K+++
Sbjct: 451 IEKKKKKSSKLKEADGESSKKEKKEK-KDKKHKKSKRKSEESEDGE-SPKKKKKS 503
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = -3
Query: 541 QKKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTDQGRKGR----GEPAEKR 374
QK+ +K+++ +E+K K + E +K +R+ E+ + + RK R E E+R
Sbjct: 660 QKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEEEERR 719
Query: 373 R 371
R
Sbjct: 720 R 720
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -3
Query: 529 DKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTDQGRKGRGEPAEKRRTVNVTEE 350
+ KRK +E K +++ + RDKK++ + K E+ + + + + A+K EE
Sbjct: 579 ENKRKQERELKKIREKEKKRDKKKQ--LKLAKEEERQRREAERLAEQAAQKALEAKRQEE 636
Query: 349 LR 344
R
Sbjct: 637 AR 638
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -3
Query: 541 QKKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTDQGRKGRGEPAEKRR 371
+K+ K + E ++ +DE +I +K++K D D+ R + A+KRR
Sbjct: 31 RKRPRTKEEGYYESESEEDEDQILNKEKKEGQSEDMFSDTSEDEKRTLPNDEAQKRR 87
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 27.9 bits (59), Expect = 1.1
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 538 KKIDKKRKANKERKNSKDETEIRDKKRKGTDDVR-KTEDNKTDQGRKGRGE 389
+K KK RK T IRD K DD + +TED+ R+G E
Sbjct: 444 QKTRKKNLKENIRKQRTTSTAIRDIAIKFLDDAKCETEDSTNLTNREGEAE 494
>SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 63
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 547 NIQK-KIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTDQGRK 401
N++K + KK++A K + + EI K++ D+ + E N +G+K
Sbjct: 14 NLKKSQASKKKQAGDPTKRLEAQAEIMRAKQRAADERKAAEANGGSKGKK 63
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/66 (19%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Frame = -3
Query: 559 IXNENIQKKIDKKRKAN---KERKNSKDETEIRDKKRKGTDDVRKTEDNKTDQGRKGRGE 389
+ ++I++K +K+K++ KERK+++ + + ++R+ + ++ E K+ +G+ + +
Sbjct: 168 LLKKSIRRKEKEKKKSSDAWKERKDNEKKAMLMRQQRREENLKKRRESKKSKKGKAPKKK 227
Query: 388 PAEKRR 371
K++
Sbjct: 228 KPSKKK 233
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.5 bits (58), Expect = 1.4
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = -3
Query: 541 QKKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTDQGRKGRGEPAEKRRTVN 362
++K+ KK++ K +K S E + + D+ +N D KG+ KR+ N
Sbjct: 190 REKLRKKQQQAK-KKGSTGEDTLASSEVSSEVDISTPAEN--DSSAKGKQAAGSKRKGPN 246
Query: 361 VTEELRPVLQAPSAKD 314
VT L+ +L+ A++
Sbjct: 247 VT-ALQKMLEEKRARE 261
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -3
Query: 550 ENIQKKIDKKRKANKERKNSKDETEIRDKKRK 455
+N K+++K + N ++KN K ++R +K+K
Sbjct: 24 QNPLKELEKILERNNKQKNKKSRNQVRREKKK 55
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = -3
Query: 550 ENIQKKIDKKRKANKERKNSK----DETEIRDKKRKGTDDVRK 434
E +KK +KK K +K +K SK D++ + +KRK D K
Sbjct: 142 EKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESK 184
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = -3
Query: 538 KKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTDQGRKGRGEPAEKRRTVNV 359
KK++K K K+ KD+ K++ G+ D ++ K + K + +P V
Sbjct: 190 KKLEKITKKKKKEHKKKDKESSSKKRKSGSSD----KEEKKKKKIKLKDKPESTSSVEKV 245
Query: 358 TEELRP 341
E RP
Sbjct: 246 KEGNRP 251
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.6 bits (56), Expect = 2.5
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -3
Query: 532 IDKKRKANKERKNSKDETEIRDKKRK----GTDDVRKTEDNKTDQGRKGRGEPAEKRRTV 365
+++ + +S+D IR+KK + G D RK ED+ + + + E +
Sbjct: 292 VERMVRQGSTLSHSEDRFTIREKKVRELLSGRYDFRKVEDDHSTTASDQKKKLIEDVEQL 351
Query: 364 NVTEELRPVLQA 329
V L+PVL++
Sbjct: 352 IVDNHLQPVLRS 363
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/41 (26%), Positives = 26/41 (63%)
Frame = -3
Query: 523 KRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTDQGRK 401
++ + KE+K+ K++ + + KK++ DD +E+ K + +K
Sbjct: 456 EKPSKKEKKDKKEKKKEKSKKKRSADDA--SEEVKKSKKKK 494
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -3
Query: 541 QKKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTDQGRK 401
Q D+K + + + ++ ++RK T+DV D K ++ RK
Sbjct: 227 QFSFDEKEREEQLLSLKEIHAKVTQQQRKNTEDVLTLRDKKLEERRK 273
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -3
Query: 550 ENIQKKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRK 434
E K ++ +K + +K KD+ + +DKK K + K
Sbjct: 235 EKAPKGLEGAKKEKQNKKEKKDKKDKKDKKEKAPKEPPK 273
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 523 KRKANKERKNSKDETEIRDKKRKG 452
++K K K KD+ E +KK+KG
Sbjct: 58 EKKDKKPEKRKKDQKEASEKKKKG 81
>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 26.2 bits (55), Expect = 3.3
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = -3
Query: 550 ENIQKKIDKKRKANKERKNSKDETEIRDKKRKGTDD 443
E ++KK+D + E+K+S ++ ++ K K ++
Sbjct: 7 EKLKKKLDSAKSGRVEKKHSNEKKYLKSVKGKNNEN 42
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 26.2 bits (55), Expect = 3.3
Identities = 20/78 (25%), Positives = 32/78 (41%)
Frame = -3
Query: 550 ENIQKKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTDQGRKGRGEPAEKRR 371
E + I+ KR+ K ETEI ++ + + K N++ RK E + R
Sbjct: 177 EAFSRSIEFKRRLEKWLLEHCSETEIPAQQLQALPSLSKNTVNESSLVRKLNLEKSTSRE 236
Query: 370 TVNVTEELRPVLQAPSAK 317
T+ L P +AK
Sbjct: 237 LRIPTQTLEPKFTTNTAK 254
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 3.3
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = -3
Query: 541 QKKIDKKRKANKERKNSKDETEI-RDKKRKGTDDVRKTEDNKTDQGRKGRG-EPAEKRRT 368
+KK+ K+R A +ER K+ + R+K+R+ + +K + + +K + E EK R
Sbjct: 77 EKKLQKQR-AQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKER- 134
Query: 367 VNVTEELR 344
+ + E+ R
Sbjct: 135 IRLQEQQR 142
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = -3
Query: 544 IQKKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTDQ 410
I +K+ R + E+K+S+ ++E+ K T+D T + ++
Sbjct: 331 IAEKVSDIRLGDGEKKSSETDSEVAATKTPATEDAPATNAGEAEE 375
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 4.4
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -3
Query: 532 IDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTD 413
ID K K + E KN D TEI++KK + V TE++K +
Sbjct: 565 IDMK-KESLELKN--DTTEIKEKKNSKSRVVGNTENSKDE 601
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 514 ANKERKNSKDETEIRDKKRKGTDDVRKT 431
+N E KN +DE + K+R+ T D T
Sbjct: 19 SNNEAKNHEDEETHQKKRRRRTTDAEAT 46
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 213 NT*SKNFVPLFKQVARTEEYEISQTYREYSEGVQNVLFFLL 91
NT S P+ + + I QT+ + EG+Q+ FF L
Sbjct: 174 NTVSPGSKPISEDLEDLNLQSIVQTFEDLPEGIQSYAFFQL 214
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 547 NIQKKIDKKRKA-NKERKNSKDETEIRDKKRKG 452
N QKKI K+KA ++ N+K+ +RD K+KG
Sbjct: 17 NNQKKIKTKKKATGQQTSNTKN---LRDVKKKG 46
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.4 bits (53), Expect = 5.8
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -3
Query: 511 NKERKNSKDETEIRDKKRKGTDDVRKTEDNKTDQGR---KGRGEPAEKRRTVNVTEE 350
NK+ K+ DE +I +KR+ + +K N + + R G G ++T V EE
Sbjct: 47 NKKSKSESDEDDIPIRKRRASS--KKNMSNSSSKKRAKVMGNGGLKNGKKTAVVKEE 101
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 7.6
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = -3
Query: 544 IQKKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTDQGRKGRGEPAEKRRTV 365
+ K+ D K +K+R+ +DE E+ +DDV ++ + D P E +
Sbjct: 4032 VSKEDDNKALEDKDRQEKEDEEEM-------SDDVGIDDEIQPDIQENNSQPPPENEDHL 4084
Query: 364 NVTEELR 344
++ E+L+
Sbjct: 4085 DLPEDLK 4091
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/33 (27%), Positives = 23/33 (69%)
Frame = -3
Query: 538 KKIDKKRKANKERKNSKDETEIRDKKRKGTDDV 440
KK++K+R+ ++RK ++ E +KK++ +++
Sbjct: 38 KKLEKEREKEQKRK-EREAREAEEKKKREANEI 69
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 7.6
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -3
Query: 526 KKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTD---QGRKGRGEPAEKRRTVNVT 356
K + N++R+ +D+ E +KKR+ DDV + DN T+ + + + E+ VN
Sbjct: 324 KFMEKNQQRREQQDKGE--NKKRQ--DDVDQATDNNTNTILEDDEKDNDEEEEEEIVNAR 379
Query: 355 EE 350
E+
Sbjct: 380 EK 381
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.0 bits (52), Expect = 7.6
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -3
Query: 544 IQKKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTDQGRKGRGEPAEKR 374
+Q+K++ +R + +KN E + TDD K +DN ++ AE R
Sbjct: 362 LQQKLENERIVEEIKKNGIQEDS------QSTDDSSKDDDNNSESNDMSPHNDAETR 412
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 7.6
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -3
Query: 526 KKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDNKTD---QGRKGRGEPAEKRRTVNVT 356
K + N++R+ +D+ E +KKR+ DDV + DN T+ + + + E+ VN
Sbjct: 324 KFMEKNQQRREQQDKGE--NKKRQ--DDVDQATDNNTNTILEDDEKDNDEEEEEEIVNAR 379
Query: 355 EE 350
E+
Sbjct: 380 EK 381
>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 242
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 17 HACVVNSIGRVCDVFIC*YNV 79
+ CV NS G D+ +C YN+
Sbjct: 48 YGCVGNSSGSSIDIDVCYYNI 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,968
Number of Sequences: 5004
Number of extensions: 46072
Number of successful extensions: 239
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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