Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_P13
(317 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0536 - 3926450-3928447 27 2.4
05_04_0413 - 21063868-21064344,21064416-21064482,21064865-210649... 27 4.2
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270... 27 4.2
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549... 26 5.6
12_02_0202 - 15465885-15466241,15466539-15468122 26 7.4
09_04_0413 + 17372852-17373787 26 7.4
09_04_0409 + 17359459-17360622 26 7.4
07_03_0811 - 21688781-21689830 26 7.4
01_07_0384 + 43209423-43210241 26 7.4
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 26 7.4
10_08_0305 - 16644276-16644290,16644611-16645258,16646764-166468... 25 9.7
07_03_1452 - 26629219-26629428,26630113-26630280,26630363-266304... 25 9.7
07_01_0879 - 7290890-7291694,7291810-7291943,7292089-7292227,729... 25 9.7
05_06_0242 + 26638401-26638781 25 9.7
03_05_0675 + 26630466-26632070 25 9.7
01_05_0084 - 17991783-17992583 25 9.7
>01_01_0536 - 3926450-3928447
Length = 665
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 50 AEVVWRGSIATVRSIGQGTVSGITDVAWIRISVIVVAVTRVDLLRSC 190
A V+W I+ G+ +S + V +R S + AVT V +L +C
Sbjct: 125 APVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSAC 171
>05_04_0413 -
21063868-21064344,21064416-21064482,21064865-21064948,
21065028-21065158,21065504-21065560,21065818-21065866,
21067357-21067442,21067715-21067792,21067952-21068074,
21068705-21068794,21068796-21068849,21068923-21069020,
21069093-21069160,21069688-21069777,21069870-21070117
Length = 599
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 61 MERQHSHRTIHRPGDCIRDNRRSLDTYIRNCCSRNQSRSVEV 186
+ + S R R C+ ++DT+ R C S N +V V
Sbjct: 326 IRKSRSIREFDRHATCVVAKYETVDTFYRRCSSANYISNVSV 367
>02_04_0130 +
20025414-20025531,20026357-20026585,20026909-20027032,
20027441-20027497,20027613-20027804,20027882-20027959,
20028437-20028619,20028715-20028795,20029196-20029228,
20029448-20029513,20029591-20029683,20030106-20030231,
20030395-20030508,20030973-20031068,20031159-20031256,
20031416-20031831,20032025-20032473,20032810-20032905
Length = 882
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 97 PGDCIRDNRRSLDTYIRNCCSRNQSRSVEVLPELQRGRRTE*TVSRTF*AVFKVD 261
P R + RSL+ ++C + + E LP++ R R + T S A F D
Sbjct: 674 PRHSSRSSGRSLEESDKSCPENTEGEAKENLPDVLRTTRDDATTSSNGEAFFSSD 728
>03_02_0859 -
11853928-11854138,11854225-11854683,11854760-11854991,
11855064-11855187,11855276-11855960,11856429-11856735,
11856832-11858188
Length = 1124
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/51 (21%), Positives = 26/51 (50%)
Frame = +2
Query: 14 CLRKYQLVAVAVAEVVWRGSIATVRSIGQGTVSGITDVAWIRISVIVVAVT 166
C R L + +++ + + +IG GT G DV+ I+++ + + ++
Sbjct: 796 CCRVAPLQKAGIVDLIKKRTSDMTLAIGDGTFPGANDVSMIQMADVGIGIS 846
>12_02_0202 - 15465885-15466241,15466539-15468122
Length = 646
Score = 25.8 bits (54), Expect = 7.4
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Frame = +2
Query: 14 CLRKYQLVAVAVAEVV------WRGSIATVRSIGQGTVSGITDVAWIRISVIVVAV-TRV 172
C R + A A AE + GS + +V + + R ++I+ V T V
Sbjct: 440 CSRGIGVRAAAAAEALVMLSSKMEGSAMIIMKANNNSVDNLVKILLDRDNIILFRVATAV 499
Query: 173 DLLRSCQSYNEDGE 214
L R C +Y ED E
Sbjct: 500 ILERLCANYTEDDE 513
>09_04_0413 + 17372852-17373787
Length = 311
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 44 AVAEVVWRGSIATVRSIGQGTV 109
AVA WRGS A + S G+G V
Sbjct: 265 AVAASAWRGSAAWLESEGEGHV 286
>09_04_0409 + 17359459-17360622
Length = 387
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 44 AVAEVVWRGSIATVRSIGQGTV 109
AVA WRGS A + S G+G V
Sbjct: 341 AVAASAWRGSAAWLESEGEGHV 362
>07_03_0811 - 21688781-21689830
Length = 349
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 203 RCSSGKTSTDLLWLRLQQLRIY-VSRLRRLSRIQSPGLWIV 84
R SSG S L L Q+ +Y V RLRRL+ + PGL ++
Sbjct: 282 RHSSGLASLTLRLAPLTQMTLYNVRRLRRLNAV-LPGLEVL 321
>01_07_0384 + 43209423-43210241
Length = 272
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 58 CMERQHSHRTIHRPG 102
C+ R++SHR IHR G
Sbjct: 149 CLGRRYSHRYIHRAG 163
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 103 DCIRDNRRSLDTYIRNCC-SRNQSRSVEVLPELQRG 207
DC++ RR L+ + CC SRN +V L G
Sbjct: 128 DCLQGCRRLLEVHPLTCCESRNMMHGFQVCHSLGGG 163
>10_08_0305 -
16644276-16644290,16644611-16645258,16646764-16646865,
16646980-16647111,16647574-16648242
Length = 521
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 44 AVAE-VVWRGSIATVRSIGQGTVSGITDVAWIRISVIVV 157
A AE +VWRG + IG + +V W RI+ + V
Sbjct: 92 AAAEFLVWRGHFLELLGIGDAGLPRAREVLWRRIAPLGV 130
>07_03_1452 -
26629219-26629428,26630113-26630280,26630363-26630425,
26630499-26630606,26630820-26630932,26631026-26631322,
26631424-26631502,26631733-26631841,26631927-26631968,
26632467-26632597,26633482-26633623,26633713-26633828,
26634121-26634657
Length = 704
Score = 25.4 bits (53), Expect = 9.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 74 IATVRSIGQGTVSGITDVAWIRISVIVVAVTRVDLLRSCQSYNE-DGEQN-EQFREHFE 244
+ T+ S G G V+G D WI + + A+ D+ R + + G N QF + FE
Sbjct: 242 VLTLPSSGSGRVNGADDPLWIDLQ-MTTAIAIEDVRREVRILSSLTGHSNLVQFYDAFE 299
>07_01_0879 -
7290890-7291694,7291810-7291943,7292089-7292227,
7292338-7292585
Length = 441
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 242 QNVRETVHSVRRPRCSSGKTSTD 174
+ RE+ S PRCSSG +S D
Sbjct: 345 ETTRESDGSATSPRCSSGLSSDD 367
>05_06_0242 + 26638401-26638781
Length = 126
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = -1
Query: 170 LWLRLQQLRIYVSRLRRLSRIQSPGLWIVRWLCCL 66
+W+ + + + LR+L + P W W+C L
Sbjct: 13 MWVTPESPFLEMPSLRKLLVVDMPPRWDATWICAL 47
>03_05_0675 + 26630466-26632070
Length = 534
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 68 GSIATVRSIGQGTVSGITDVAWIRISVIVVAVTRVDLLRSCQSYNE 205
GS + IG G + + A + + VVA+ +DL RS + +E
Sbjct: 26 GSYRLLCKIGSGVSAVVYKAACVPLGSAVVAIKAIDLERSRANLDE 71
>01_05_0084 - 17991783-17992583
Length = 266
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -3
Query: 138 RIQATSVIPDTVPWPMDRTVAML 70
+++A ++IPD P+P +R +A L
Sbjct: 219 KLRAAAMIPDMTPFPANRYMATL 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,498,770
Number of Sequences: 37544
Number of extensions: 107248
Number of successful extensions: 363
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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