Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P13
         (317 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                       29   0.82 
SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_52236| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_26537| Best HMM Match : TipAS (HMM E-Value=8.4)                     27   3.3  
SB_4480| Best HMM Match : TAT_ubiq (HMM E-Value=8.2)                   26   5.8  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     26   5.8  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               26   7.6  
SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.6  
SB_34354| Best HMM Match : Motile_Sperm (HMM E-Value=0.6)              26   7.6  
SB_10487| Best HMM Match : FGF (HMM E-Value=1.4e-06)                   26   7.6  
SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)                      26   7.6  
SB_56330| Best HMM Match : PP1_inhibitor (HMM E-Value=8.4)             26   7.6  
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              26   7.6  

>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 152 VVAVTRVDLLRSCQS-YNEDGEQNEQFREHFEQFSK 256
           ++ V R +L++ C   +NE  E  + +++ +EQF K
Sbjct: 339 ILKVIRKNLVKKCMELFNEIAEDQDNYKKFYEQFGK 374


>SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -1

Query: 254 LKTAQNVRETVHSVRRPRCSSGKTSTDLLWLRLQQL-RIYVSRLRRLSRIQSPGLWIVRW 78
           L     + ETV  VR+      +      W  L +L     +R R  SR +  G W+V W
Sbjct: 170 LNGESGLNETVFKVRKVLSKHKEAMNASPWRSLPELTNAGGARCRDSSRPRR-GPWLVCW 228

Query: 77  LCCLS 63
            CC++
Sbjct: 229 TCCMT 233


>SB_52236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 119 LSRIQSPGLWIVRWLCCLSIQP 54
           LS +  PGL ++R LC LS QP
Sbjct: 18  LSNVFLPGLTLIRSLCTLSNQP 39


>SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2032

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -1

Query: 299 FFKSSRAGV---LDHQSTLKTAQNVRETVHSVRRPRCS 195
           FF +S  GV   L H  TL  A + +   HSV  P C+
Sbjct: 26  FFSASGTGVEAFLTHDGTLVVASSNKREYHSVMVPDCN 63


>SB_26537| Best HMM Match : TipAS (HMM E-Value=8.4)
          Length = 233

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -1

Query: 299 FFKSSRAGV---LDHQSTLKTAQNVRETVHSVRRPRCS 195
           FF +S  GV   L H  TL  A + +   HSV  P C+
Sbjct: 190 FFSASGTGVEAFLTHDGTLVVASSNKREYHSVMVPDCN 227


>SB_4480| Best HMM Match : TAT_ubiq (HMM E-Value=8.2)
          Length = 107

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 281 AGVLDHQSTLKTAQNVRETVHSVRRPR 201
           A V+D Q  LKT QN +   +  RRPR
Sbjct: 71  ANVMDEQH-LKTLQNAQHQAYRYRRPR 96


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 206 DGEQNEQFREHFEQFSKLTDDLGHRRVT 289
           +G  N   +EH  Q  +L D++  +RVT
Sbjct: 265 EGAHNSSAQEHAHQLQELRDEMEQQRVT 292


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 282 RRCPRSS-VNFENCSKCSRNCSFCS 211
           + CP+   V++  C KC ++C  CS
Sbjct: 499 KSCPKGYFVSYGRCLKCLKSCESCS 523


>SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1820

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 284  RAGVLDHQSTLKTAQNVRETVHSVRRPRCSS 192
            + GVL HQ     + +   T+  ++RP C S
Sbjct: 1053 KVGVLSHQGPKSFSDSQGVTIVGIQRPNCQS 1083


>SB_34354| Best HMM Match : Motile_Sperm (HMM E-Value=0.6)
          Length = 716

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 300 FF*VVTRRCPRSSVNFENCSKCSRNCSFCSPSS 202
           FF   T    + ++  +N SKCSRN  F  P++
Sbjct: 17  FFDAETDVVHQMTLTVQNLSKCSRNIRFHGPAT 49


>SB_10487| Best HMM Match : FGF (HMM E-Value=1.4e-06)
          Length = 617

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -1

Query: 242 QNVRETVHSVRRPRCSSGKTSTDLLWLRLQQLRIYV 135
           ++ R++    RRP+C+  KT+T    +RL +  +++
Sbjct: 338 KDFRQSTDQSRRPKCTRVKTTTSGSEMRLTKRHLHI 373


>SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)
          Length = 975

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 77  LCCLSIQPXXXXXXLIDIFLSTS 9
           +CC+ + P        D+F+STS
Sbjct: 151 VCCIGVTPRHVMVTSCDVFISTS 173


>SB_56330| Best HMM Match : PP1_inhibitor (HMM E-Value=8.4)
          Length = 160

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +2

Query: 107 VSGITDVAWIRISVIVVAVTRVDLLRSCQSYNEDGEQNEQFREHFEQFSKLTDDL 271
           + G  DVA+ +I V+V  + R+D     Q+ N+  E  E+  E   + +  TD+L
Sbjct: 55  LEGQLDVAFNKIKVVVGELQRID-NDLIQNVNDSDELRERTEECERRQANNTDEL 108


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 282 RRCPRSS-VNFENCSKCSRNCSFCS 211
           + CP+   V++  C KC ++C  CS
Sbjct: 148 KSCPKGYFVSYGRCLKCLKSCESCS 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,731,648
Number of Sequences: 59808
Number of extensions: 127570
Number of successful extensions: 539
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)