Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_P13
(317 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 31 0.22
At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / hea... 29 0.89
At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p... 28 1.2
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 28 1.2
At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-... 27 2.1
At4g31710.1 68417.m04501 glutamate receptor family protein (GLR2... 27 3.6
At4g02460.1 68417.m00333 DNA mismatch repair protein, putative s... 27 3.6
At1g12910.1 68414.m01499 flower pigmentation protein (AN11) cont... 27 3.6
At2g37390.1 68415.m04585 heavy-metal-associated domain-containin... 26 4.8
At1g80660.1 68414.m09465 ATPase 9, plasma membrane-type, putativ... 26 4.8
At5g64750.1 68418.m08142 AP2 domain-containing transcription fac... 26 6.3
At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N domain-... 26 6.3
At5g66860.1 68418.m08429 expressed protein 25 8.3
At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa... 25 8.3
At3g33530.1 68416.m04290 transducin family protein / WD-40 repea... 25 8.3
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei... 25 8.3
At1g19770.1 68414.m02471 purine permease-related low similarity ... 25 8.3
At1g08300.1 68414.m00916 expressed protein 25 8.3
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = +2
Query: 83 VRSIGQGTVSGITDVAWIRISVIVVAVTRVDLLRSCQSYNEDGEQNEQFREHFEQFSK 256
++ + G + +TDV W R +++V++ R ++ D E NE EH+ + ++
Sbjct: 407 MQKVPSGHFAAVTDVTWARTGEYLLSVSQDQTTRVFSAWKND-EGNEAEDEHWHELAR 463
>At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / heat
shock protein 83 (HSP83) nearly identical to SP|P27323
Heat shock protein 81-1 (HSP81-1) (Heat shock protein
83) {Arabidopsis thaliana}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00183: Hsp90 protein
Length = 705
Score = 28.7 bits (61), Expect = 0.89
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 152 VVAVTRVDLLRSC-QSYNEDGEQNEQFREHFEQFSK 256
++ V R +L++ C + +NE E E + + +E FSK
Sbjct: 385 ILKVIRKNLVKKCIEMFNEIAENKEDYTKFYEAFSK 420
>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 909
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 189 QDLNRSTLVTATTITDIRIQATSVIPDTVPWPMDRTVA 76
+ +N +TLVTA I A +PDT W M T+A
Sbjct: 689 ESVNYATLVTARLIIVASHMAGLGLPDTEAWNMIETIA 726
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 189 QDLNRSTLVTATTITDIRIQATSVIPDTVPWPMDRTVA 76
+ +N +TLVTA I A +PDT W M T+A
Sbjct: 689 ESVNYATLVTARLIIVASHMAGLGLPDTEAWNMIETIA 726
>At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N
domain-containing protein low similarity to NUB1
(NEDD8-interacting protein) [Homo sapiens] GI:13383476;
contains Pfam profile PF00627: UBA/TS-N domain
Length = 562
Score = 27.5 bits (58), Expect = 2.1
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Frame = +2
Query: 20 RKYQLVAVAVAEVV----WRGSIATVRSIGQGTVSGITDVAWIRISVIVVAVTRVDLLRS 187
R+ QLV ++VAE+V RG + G I + + SV T ++ +
Sbjct: 412 RQEQLVGISVAELVSMGFERGKATSALEAGGSREDTIQRL--LSASVANPGTTTTSVINA 469
Query: 188 CQSYNEDGEQNEQFREHFEQFSKL----TDDLGHRRVTT 292
S N G ++ F EQ S++ TDD+ +R T+
Sbjct: 470 TSSTNNVGAESSGFGGGAEQDSEMKDETTDDIANRASTS 508
>At4g31710.1 68417.m04501 glutamate receptor family protein (GLR2.4)
plant glutamate receptor family, PMID:11379626
Length = 898
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -1
Query: 278 GVLDHQSTLKTAQNVRETVHSVRRPRCSSGKTSTDLLWLRLQQLRIYVSRLRR 120
G++ + A N+R +V P + + S DLL L + R++V + R
Sbjct: 202 GIMPGLTDALQAINIRIPYRTVISPNATDDEISVDLLKLMTKPTRVFVVHMNR 254
>At4g02460.1 68417.m00333 DNA mismatch repair protein, putative
similar to SP|P54278 PMS1 protein homolog 2 (DNA
mismatch repair protein PMS2) {Homo sapiens}; contains
Pfam profiles PF02518: ATPase, histidine kinase-, DNA
gyrase B-, and HSP90-like domain protein, PF01119: DNA
mismatch repair protein, C-terminal domain
Length = 923
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -1
Query: 251 KTAQNVRETVHSVRRPRCSSGKTSTDLLWLRLQQLRIYVSRLRRLSRIQSPG 96
+ +Q +R + P S+G L Q LR RL RLSR+QS G
Sbjct: 602 RCSQPLRSVATVLDSPAQSTGPKMFSTLEFSFQNLR--TRRLERLSRLQSTG 651
>At1g12910.1 68414.m01499 flower pigmentation protein (AN11)
contains 3 WD-40 repeats (PF00400); identical to
GB:AAC18912 from [Arabidopsis thaliana] (Genes Dev. 11
(11), 1422-1434 (1997))
Length = 346
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -3
Query: 267 SSVNFENCSKCSRNCSFCSPSSL*LWQDLNRSTLVTATTITDIRI 133
S V ++C ++N FC P + W + + T++T T I
Sbjct: 118 SRVELKSCLNSNKNSEFCGPLTSFDWNEAEPRRIGTSSTDTTCTI 162
>At2g37390.1 68415.m04585 heavy-metal-associated domain-containing
protein contains Pfam PF00403: Heavy-metal-associated
domain; similar to copper homeostasis factor (CCH)
(ATX1) (GB:U88711) (TIGR_Ath1:At3g56240) [Arabidopsis
thaliana]
Length = 259
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 64 ERQHSHRTIHRPGDCIRDNRRSL-DTYIRNCCSRNQSRSVEVLPELQRGRRT 216
+ ++S R I R I+D RRS D +I+ S E+ +GRR+
Sbjct: 31 DERNSGRAIDRHNPIIKDGRRSFADDFIKLPTSAEDGEMSNKKLEIYKGRRS 82
>At1g80660.1 68414.m09465 ATPase 9, plasma membrane-type, putative /
proton pump 9, putative / proton-exporting ATPase,
putative strong similarity to SP|Q42556 ATPase 9, plasma
membrane-type (EC 3.6.3.6) (Proton pump 9) {Arabidopsis
thaliana}; contains InterPro accession IPR001757:
ATPase, E1-E2 type
Length = 954
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 158 LQQLRIYVSRLRRLSRIQSPGLWIV 84
+ Q I+V+R R S ++ PG W++
Sbjct: 769 VSQALIFVTRSRSWSYVERPGFWLI 793
>At5g64750.1 68418.m08142 AP2 domain-containing transcription
factor, putative contains similarity to transcription
factor
Length = 391
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 194 SYNEDGEQNEQFREHFEQFSKLTDDL 271
SY+E Q +QF++H +Q L D +
Sbjct: 300 SYSEMARQQQQFQQHHQQSLDLYDQM 325
>At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N
domain-containing protein contains Pfam profile PF00627:
UBA/TS-N domain
Length = 649
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = -3
Query: 222 SFCSPSSL*LWQDLNRSTLVTATTITDIRIQATSVIPDTVPWPMDRTV 79
+F P ++ W + T T+T SV P +P+ D+TV
Sbjct: 548 TFLDPQAIQGWTSVGHEAAPTTITLTIYLDDGGSVTPVYIPFRSDQTV 595
>At5g66860.1 68418.m08429 expressed protein
Length = 249
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 11 RCLRKYQLVAVAVAEVVWRGSIATVRSIGQ 100
RC+ +YQ + E RG A R+IG+
Sbjct: 28 RCIHQYQTIQAIPREATGRGVSARDRTIGR 57
>At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 506
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -3
Query: 276 CPRSSVNFENCSKCSRNCSFCSPSSL*LWQDLNRSTLVTATTITDI 139
CP S N NC C + CS P L N++ + + + I
Sbjct: 48 CP--STNKRNCPICKQKCSLKDPCRLYFQSSGNQTDSIASDKVVGI 91
>At3g33530.1 68416.m04290 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 11
(SP:Q9BZH6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies, 3
weak)|2763187|gb|T46504.1|T46504
Length = 1345
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = -1
Query: 191 GKTSTDLLWLRL-QQLRIYVSRLRRLS--RIQSPGL 93
G+TS L WL+L Q +R +++L R S +I SP L
Sbjct: 1016 GETSEALFWLQLPQAIRHLMNKLTRRSPQKISSPTL 1051
>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
similar to SP|Q05022 rRNA biogenesis protein RRP5
{Saccharomyces cerevisiae}; contains Pfam profile
PF00575: S1 RNA binding domain
Length = 1838
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 164 TRVDLLRSCQSYNEDGEQNEQFREHFEQFSKLTDDLG 274
T +D + S +ED + N+ + FE+ L+ D+G
Sbjct: 1253 TSLDGMSSADHLSEDLKNNDNVCKRFERIEDLSPDMG 1289
>At1g19770.1 68414.m02471 purine permease-related low similarity to
purine permease [Arabidopsis thaliana] GI:7620007;
contains Pfam profile PF03151: Domain of unknown
function, DUF250
Length = 393
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 32 LVAVAVA-EVVWRGSIATVRSIGQGTVSGITDVAWIRISVIVV 157
+V AV+ +V W G + V S+ + I+ + W +SV+VV
Sbjct: 311 MVGQAVSWQVYWVGIVGLVYSVSSVLSNVISVITWPIVSVLVV 353
>At1g08300.1 68414.m00916 expressed protein
Length = 509
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 185 TSTDLLWLRLQQLRIYVSRLRRLSRIQSPGLWIV 84
TS + L +R+Q LR+YVS ++ R + L IV
Sbjct: 285 TSKEKLGVRIQNLRMYVSFIQDAKRQEGEILKIV 318
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,228,839
Number of Sequences: 28952
Number of extensions: 85735
Number of successful extensions: 357
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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