Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P12
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    28   0.45 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   1.8  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   2.4  
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    25   3.2  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    25   4.2  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    24   7.3  
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    24   7.3  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    24   7.3  

>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 27.9 bits (59), Expect = 0.45
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 329 SAGRWSVQFIQNRKQ*RLQSFYFSSSSPALWGLKVPVFAPPIIGLFVVPTAG 174
           S G W+  FI+N  Q R  S Y S S       K   ++  ++ LF++  +G
Sbjct: 333 SGGGWNASFIENHDQTRTVSRYLSDSP------KYRAYSSKLMALFIIFQSG 378


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = +1

Query: 13  SVPPSPF*TQPLKSGPSRVNPGRLATLNSHVTPAWP------VVGKCGSRTFQLAPVAVS 174
           S PP P       S PS   P R+ +L++   P  P      V     S    +APV+++
Sbjct: 228 SAPPIP------PSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMN 281

Query: 175 PAVGTTNRP 201
           PA+ +T++P
Sbjct: 282 PAINSTSKP 290


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 258 GKIERLKSSLFSILNELNTPSAGRIH 335
           G +E   S  +   NE N PSA RIH
Sbjct: 149 GALELFDSRFYDRQNEENQPSARRIH 174


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 266 YFSSSSPALWGLKVPVFAPPIIGLFVV 186
           YFS +   +W  K P++   I+GLF V
Sbjct: 99  YFSFTMLYIWSWKHPLYRISILGLFDV 125


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 296 NRKQ*RLQSFYFSSSSP--ALWGLKVPVFAPPI 204
           N  Q RLQ+ +F SSSP  A  G + P  + P+
Sbjct: 58  NGPQLRLQTHFFHSSSPMHATKGFRFPKSSTPL 90


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 7   PASVP-PSPF*T-QPLKSGPSRVNPGRLATLNSHVTPAWPVV 126
           PA++  P+P  T  P  +GPSRV  G    L+   TP  P +
Sbjct: 364 PANISSPNPNPTLAPNPTGPSRVTSGTEDLLSLDATPFSPTL 405


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 119 GHAGVTCEFRVARRPGFTRD 60
           G  GV+C + +A  P F RD
Sbjct: 13  GITGVSCLYFLAHHPSFNRD 32


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 162 CCCKSCRWYHKQAYNR 209
           C CK+CR Y K+AY R
Sbjct: 307 CVCKTCRRY-KRAYVR 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,542,523
Number of Sequences: 5004
Number of extensions: 31749
Number of successful extensions: 63
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)