Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_P12
(338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0202 + 5735613-5736170 29 0.93
11_06_0171 + 20875928-20876554 28 2.1
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 28 2.1
10_08_0636 + 19478723-19478869,19479984-19480212,19480321-194804... 27 2.8
05_03_0458 + 14280953-14281866,14281964-14282912 27 2.8
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 27 3.8
10_02_0003 + 4022220-4022900 27 3.8
05_04_0339 + 20397591-20397627,20398494-20398526,20399210-203994... 27 3.8
03_05_0267 - 22538631-22539452 27 3.8
07_03_0218 + 15305474-15306082,15306127-15306327,15306442-15306552 27 5.0
07_03_0189 + 14862848-14862904,14862936-14863071,14864436-148645... 27 5.0
06_01_0008 + 141405-142421 27 5.0
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 27 5.0
07_03_0771 - 21381276-21381461,21381583-21381733,21381823-213820... 26 6.6
04_01_0107 - 1107976-1108033,1108411-1108638,1110109-1110422,111... 26 6.6
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 26 6.6
03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524 26 6.6
02_04_0172 - 20595357-20596129,20596994-20597138 26 6.6
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424... 26 8.7
07_03_1117 - 24096425-24097853,24097894-24098336 26 8.7
01_06_0817 + 32214729-32215078,32215247-32215348,32216559-32217951 26 8.7
01_06_0716 - 31425189-31426460 26 8.7
>09_02_0202 + 5735613-5736170
Length = 185
Score = 29.1 bits (62), Expect = 0.93
Identities = 23/87 (26%), Positives = 32/87 (36%)
Frame = +1
Query: 1 SGPASVPPSPF*TQPLKSGPSRVNPGRLATLNSHVTPAWPVVGKCGSRTFQLAPVAVSPA 180
S PA+ PP P QP+ G GR ++ PA G + P A++ A
Sbjct: 82 SSPAAAPPPPAQAQPVGVG------GRAIDSSAAPAPAHTAAGAGVVNSGVAPPGAIAGA 135
Query: 181 VGTTNRPIIGGANTGTFSPQSAGDEEE 261
G RP G+ G + E
Sbjct: 136 GGALGRPAAAAGGDGSAVDAPGGGDVE 162
>11_06_0171 + 20875928-20876554
Length = 208
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 1 SGPASVPPSPF*TQPLKSGPSRVNPGRLATLNSHV 105
S P+ PPSP T L P+ NP R+ +SH+
Sbjct: 20 SPPSQAPPSPTPTTYLTKCPNNANP-RVMVSSSHI 53
>02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/76 (25%), Positives = 28/76 (36%)
Frame = +3
Query: 51 IRAVPGKSGXSGNPKFTCYSRMARRRQMWLSHISVGTCCCKSCRWYHKQAYNRRCKYRHF 230
+ A +SG P + R + S G CK WY Q + R C+
Sbjct: 1523 VHASTCRSGSCQYPNCRKVKGLFRHGMQCKTRASGGCVLCKKM-WYMLQLHARACRDSGC 1581
Query: 231 QPPKCRRRGGKIERLK 278
P+CR + RL+
Sbjct: 1582 NVPRCRDLKEHLRRLQ 1597
>10_08_0636 +
19478723-19478869,19479984-19480212,19480321-19480414,
19480598-19480721,19480922-19481023,19481103-19481254,
19481353-19481446,19481642-19481827
Length = 375
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 99 TCYSRMARRRQMWLSHISVGTCCCK 173
TC R+A R+ +S +++ C CK
Sbjct: 299 TCLKRIAERKGKTMSQVAINWCICK 323
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 27.5 bits (58), Expect = 2.8
Identities = 22/76 (28%), Positives = 30/76 (39%)
Frame = +1
Query: 1 SGPASVPPSPF*TQPLKSGPSRVNPGRLATLNSHVTPAWPVVGKCGSRTFQLAPVAVSPA 180
S P+S P SP PL+ P + P L + +SH TP P L PV +
Sbjct: 56 SSPSSSPSSPPPLPPLQPTPPPLPPTTL-SCSSHPTPPPPPSPTTSPSASSLPPVPTPRS 114
Query: 181 VGTTNRPIIGGANTGT 228
++ A T T
Sbjct: 115 ASSSKCSAPTSAQTPT 130
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 27.1 bits (57), Expect = 3.8
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +1
Query: 43 PLKSGPSRVNPGRLATLNSHVTPAWPV-VGKCGSRTFQLAPVAVSPAVGTTNRPIIGGAN 219
PL S P P + +H PA V + G R+ P+ VSP V R GG
Sbjct: 6 PLPSPPPPPTPPPSPSNRNHRHPASRVGAARGGPRSDPATPIPVSPRVSVMRRGGGGGGG 65
Query: 220 TG 225
G
Sbjct: 66 GG 67
>10_02_0003 + 4022220-4022900
Length = 226
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +1
Query: 52 SGPSRVNPGRLATLNSHVTPAWPVVGKCGSRTFQLAPVAVSPAVGTT 192
SGPSR S ++ AWP V G R F A A S + TT
Sbjct: 181 SGPSRAAASSAGRCPSTLSAAWPSVTSNGRRGFGSAS-ATSSSPSTT 226
>05_04_0339 +
20397591-20397627,20398494-20398526,20399210-20399438,
20402055-20402184,20402251-20402532
Length = 236
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +3
Query: 165 CCKSC-RWYHKQAYN-RRCKYRHFQPPKCRRRGGKIER 272
CC SC RWYH + + H + KC G K R
Sbjct: 198 CCDSCERWYHGKCVKITPARAEHIKHYKCPDCGNKRAR 235
>03_05_0267 - 22538631-22539452
Length = 273
Score = 27.1 bits (57), Expect = 3.8
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = +1
Query: 1 SGPASVPPSPF*TQPLKSGPSRVNPGRLATLNSHVTPAWPVVG 129
S PAS PSP T P S PSR R TP+ PV+G
Sbjct: 187 SPPASPSPSPARTSPPSSSPSRGCSAR------RPTPSPPVLG 223
>07_03_0218 + 15305474-15306082,15306127-15306327,15306442-15306552
Length = 306
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 215 APPIIGLFVVPTAGLTATGAN*NVREPHLPTTGH 114
A IIG FV+ +AT N R+ H+P H
Sbjct: 174 AAEIIGTFVLVYTVFSATDPKRNARDSHVPQFAH 207
>07_03_0189 +
14862848-14862904,14862936-14863071,14864436-14864593,
14864640-14865533,14865634-14865792,14866342-14866623
Length = 561
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -3
Query: 225 ACICTADYRPVCGTNGRTYSNRCQLKCARATFAYDGPCGSNM*I*GCQTXRIYPGRPGF 49
A + T ++ P G++ R+Y+ C L ++G GS++ + T + P PGF
Sbjct: 233 ARVVTLNFSPYHGSHDRSYNFPCHL--------FNGKSGSHLQVLQLDTVTLGPSPPGF 283
>06_01_0008 + 141405-142421
Length = 338
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/56 (26%), Positives = 22/56 (39%)
Frame = +1
Query: 52 SGPSRVNPGRLATLNSHVTPAWPVVGKCGSRTFQLAPVAVSPAVGTTNRPIIGGAN 219
+ PS P RLA ++ WP+ G + P P G+T+ G N
Sbjct: 271 ASPSPAPPPRLAERRFRISLPWPLRAAFGGQAESSNPTNQDPVGGSTDASGSGNNN 326
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 230 KVPVFAPPIIGLFVVPTAGLTATGAN 153
K P PPI G+F PT G+ A ++
Sbjct: 80 KCPFRHPPIDGMFGAPTTGMPAVSSH 105
>07_03_0771 -
21381276-21381461,21381583-21381733,21381823-21382060,
21382161-21382368,21382650-21382777,21382892-21383029,
21383160-21384012
Length = 633
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 282 KTSIVLFFLLVACTLGAESACICTADYRPVCGTNGRTYS 166
+ S VL +L+ + A + + A PVCGT+G Y+
Sbjct: 3 RRSSVLHAVLLLLLVAAVALPLAAAQPWPVCGTSGGNYT 41
>04_01_0107 -
1107976-1108033,1108411-1108638,1110109-1110422,
1110568-1110680,1111740-1111845
Length = 272
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 69 YPGRPGFERLSLKWTRRD 16
YP PG RLS++W+R D
Sbjct: 58 YPFGPGRRRLSVEWSRGD 75
>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -3
Query: 231 ESACICTADY-RPVCGTNGRTYSNRCQLKCARA 136
++ C+C P+C G T+ C L+C A
Sbjct: 1183 DACCLCLKPLIHPLCCPKGHTFCKECILECLLA 1215
>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
Length = 651
Score = 26.2 bits (55), Expect = 6.6
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Frame = +3
Query: 93 KFTC---YSRMARRRQMWLSHISVGTCCCKSC-RWYHKQAYNRRCKYRH--FQPPKCRRR 254
+F C Y RM + + LS TC KSC R + Y RR + H P KC
Sbjct: 539 RFQCEIDYCRMTFKNRAELSVHKKNTCTVKSCGRHFRSHKYLRRHQSIHNDDMPYKCPWE 598
Query: 255 G 257
G
Sbjct: 599 G 599
>02_04_0172 - 20595357-20596129,20596994-20597138
Length = 305
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 43 PLKSGPSRVNPGRLATLNSHVTPAWPVVGKC 135
P + P + G L +L + P+WP+ G C
Sbjct: 19 PTRFDPMHLEAGLLPSLPGGLGPSWPLGGGC 49
>10_08_0849 +
21040043-21040199,21040620-21040678,21040925-21042494,
21042583-21042710,21042793-21043033,21043160-21043710
Length = 901
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 243 CRRRGGKIERLKSSLFSILNELNTPSA 323
C+ +G LKS + + LN+LN P A
Sbjct: 187 CKNKGELCPSLKSLIHNKLNDLNNPHA 213
>07_03_1117 - 24096425-24097853,24097894-24098336
Length = 623
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 258 LLVACTLGAESACICTADYRPVCGTNGRTYS 166
L +ACT+ A S C + RP+C + +Y+
Sbjct: 354 LPMACTMYASSECYFGLNLRPMCDPSEVSYT 384
>01_06_0817 + 32214729-32215078,32215247-32215348,32216559-32217951
Length = 614
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 258 LLVACTLGAESACICTADYRPVCGTNGRTYS 166
L +ACT+ A S C + RP+C + +Y+
Sbjct: 340 LPMACTMYASSECYFGLNLRPMCDPSEVSYT 370
>01_06_0716 - 31425189-31426460
Length = 423
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 42 ASQIRAVPGKSGXSGNPKFTCYSRMARRRQMWLSHI 149
A+ R +P + +G F+C + + R +WLSH+
Sbjct: 113 AAPPRLLPPEQLAAGLRAFSCVASLHRLSAVWLSHL 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,003,179
Number of Sequences: 37544
Number of extensions: 244822
Number of successful extensions: 696
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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