Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_P12
(338 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 42 9e-05
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 38 0.001
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 38 0.001
U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical pr... 33 0.069
Z83233-5|CAB05765.2| 340|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 29 1.1
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ... 28 2.0
Z73098-10|CAA97336.2| 391|Caenorhabditis elegans Hypothetical p... 27 2.6
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 27 2.6
U23528-7|AAK31383.2| 254|Caenorhabditis elegans Hypothetical pr... 27 2.6
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 27 2.6
Z81556-1|CAB04524.1| 965|Caenorhabditis elegans Hypothetical pr... 27 3.4
U41559-10|AAC24264.2| 371|Caenorhabditis elegans Hypothetical p... 27 3.4
AL032660-2|CAA21751.1| 690|Caenorhabditis elegans Hypothetical ... 27 3.4
AL032641-4|CAA21647.1| 454|Caenorhabditis elegans Hypothetical ... 27 3.4
AC006655-1|AAF39875.1| 391|Caenorhabditis elegans Serpentine re... 27 4.5
AL021475-1|CAA16312.1| 758|Caenorhabditis elegans Hypothetical ... 26 6.0
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 26 7.9
AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear horm... 26 7.9
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 42.3 bits (95), Expect = 9e-05
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Frame = -3
Query: 222 CICTADYRPVCGTNGRTYSNRCQLKCARAT-----FAYDGPC 112
C C + RPVCGT+ TY+N C L+C + T F Y+G C
Sbjct: 19 CDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTC 60
Score = 35.1 bits (77), Expect = 0.013
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Frame = -3
Query: 216 CTADYRPVCGTNGRTYSNRCQLK---CARAT----FAYDGPC 112
C Y P+CGTNG T++N C L+ C A AY G C
Sbjct: 772 CDNSYDPLCGTNGVTFTNACSLQKEICESANSTIEVAYTGMC 813
Score = 31.1 bits (67), Expect = 0.21
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 216 CTADYRPVCGTNGRTYSNRCQL 151
C +Y PVC +NG+ N C+L
Sbjct: 872 CPKEYSPVCASNGQNIVNECEL 893
Score = 30.3 bits (65), Expect = 0.37
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 216 CTADYRPVCGTNGRTYSNRCQLK 148
C + PVC T RT+ N CQ K
Sbjct: 257 CDKSWDPVCDTRNRTHKNVCQFK 279
Score = 30.3 bits (65), Expect = 0.37
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 216 CTADYRPVCGTNGRTYSNRCQLK 148
CT D P+C ++ TY N CQ +
Sbjct: 590 CTDDKHPICASDFSTYENLCQFR 612
Score = 29.1 bits (62), Expect = 0.85
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -3
Query: 216 CT-ADYRPVCGTNGRTYSNRCQLKCAR 139
CT ++ PVC TNG Y N C + R
Sbjct: 119 CTNTEFDPVCDTNGSVYRNLCVFQMRR 145
Score = 29.1 bits (62), Expect = 0.85
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 216 CTADYRPVCGTNGRTYSNRCQLKCAR 139
C +D+ PVC + G T+ N C R
Sbjct: 818 CPSDFSPVCDSKGSTHQNICHFGVKR 843
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 216 CTADYRPVCGTNGRTYSNRCQLKCARATFAYDG 118
C D +PVC + G + N C+ +R A G
Sbjct: 537 CPTDGQPVCDSAGNLHGNLCEFTYSRCIAASKG 569
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = -3
Query: 318 MECSVHSKSKTMKTSIVLFFLLVACTLGAESACICTADYRPVCGTNGRTYSNRCQLKCAR 139
M V+ + + M +I L + T + C +PVC + GRT+ + C ++
Sbjct: 1039 MNHCVYQQRRCMAQTISQKTLNIVHTGECCALASCPKTGQPVCDSRGRTHDSLCHFHNSK 1098
Query: 138 ATF 130
F
Sbjct: 1099 CIF 1101
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 38.3 bits (85), Expect = 0.001
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = -3
Query: 216 CTADYRPVCGTNGRTYSNRCQLKCA 142
CT +++ VCG++G+TYSN C+L+ A
Sbjct: 468 CTDEFKEVCGSDGKTYSNECRLQNA 492
Score = 34.7 bits (76), Expect = 0.017
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 216 CTADYRPVCGTNGRTYSNRCQLKCA 142
CT + VCGT+G+TY N C LK A
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLKLA 347
Score = 34.7 bits (76), Expect = 0.017
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 216 CTADYRPVCGTNGRTYSNRCQLK 148
C RPVC TNG T+ N C++K
Sbjct: 397 CEDVMRPVCATNGETFDNECEMK 419
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
Frame = -3
Query: 201 RPVCGTNGRTYSNRCQLK---CARATF---AYDGPC 112
+ VCGT+G TYS+ C +K C ++ F A++G C
Sbjct: 549 KEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKC 584
Score = 30.7 bits (66), Expect = 0.28
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -3
Query: 195 VCGTNGRTYSNRCQLK 148
VCG++G TYSN C+LK
Sbjct: 880 VCGSDGTTYSNLCELK 895
Score = 29.9 bits (64), Expect = 0.49
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Frame = -3
Query: 327 GRPMECSVHSKSKTMKTSIVLFFLL--VACTLGAES---ACIC-----TADYRPVCGTNG 178
G P+ S + KTS F + AC GA AC C +++Y P+CG++G
Sbjct: 641 GAPISEMPPSHCHSSKTSFPDFKVRRPCACYFGATCHNWACTCPTCNLSSNY-PICGSDG 699
Query: 177 RTYSNRCQL 151
Y+N+C L
Sbjct: 700 IVYNNQCHL 708
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 38.3 bits (85), Expect = 0.001
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = -3
Query: 216 CTADYRPVCGTNGRTYSNRCQLKCA 142
CT +++ VCG++G+TYSN C+L+ A
Sbjct: 476 CTDEFKEVCGSDGKTYSNECRLQNA 500
Score = 34.7 bits (76), Expect = 0.017
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 216 CTADYRPVCGTNGRTYSNRCQLKCA 142
CT + VCGT+G+TY N C LK A
Sbjct: 331 CTMNSAHVCGTDGKTYLNECFLKLA 355
Score = 34.7 bits (76), Expect = 0.017
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 216 CTADYRPVCGTNGRTYSNRCQLK 148
C RPVC TNG T+ N C++K
Sbjct: 405 CEDVMRPVCATNGETFDNECEMK 427
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
Frame = -3
Query: 201 RPVCGTNGRTYSNRCQLK---CARATF---AYDGPC 112
+ VCGT+G TYS+ C +K C ++ F A++G C
Sbjct: 557 KEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKC 592
Score = 30.7 bits (66), Expect = 0.28
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -3
Query: 195 VCGTNGRTYSNRCQLK 148
VCG++G TYSN C+LK
Sbjct: 819 VCGSDGTTYSNLCELK 834
>U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical
protein ZK813.6 protein.
Length = 251
Score = 32.7 bits (71), Expect = 0.069
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Frame = -3
Query: 228 SACICTADYRPVCGTNGR---TYSNRCQLKCAR-----ATFAYDGPCGS 106
S C C + PVC G TYSN+C +CA+ Y+G C S
Sbjct: 23 STCSCKPEIDPVCVREGPYQYTYSNKCVFQCAQENKKDLVLLYEGSCCS 71
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = -3
Query: 234 AESACICTA----DYRPVCGTNGRTYSNRC 157
++ C CTA ++ PVC G+T++N C
Sbjct: 115 SQEKCSCTAPCPTEWNPVCDKKGQTHANFC 144
>Z83233-5|CAB05765.2| 340|Caenorhabditis elegans Hypothetical
protein K06B4.5 protein.
Length = 340
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 195 QAYNRRCKYRHFQPPKCRRRGGKIERLKSSLFSILNELN 311
Q YN K R + KC++ G K+ LK+SL + N+LN
Sbjct: 39 QNYNSPIKCRACRFRKCQKVGMKLLTLKTSLPDLDNDLN 77
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 184 QRQDLQQQVPTEMCESHICLRRAMRE 107
Q Q ++ Q+ TEMC + +CLR RE
Sbjct: 3616 QSQRMRYQLITEMCTTGVCLRGECRE 3641
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 184 QRQDLQQQVPTEMCESHICLRRAMRE 107
Q Q ++ Q+ TEMC + +CLR RE
Sbjct: 3616 QSQRMRYQLITEMCTTGVCLRGECRE 3641
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 184 QRQDLQQQVPTEMCESHICLRRAMRE 107
Q Q ++ Q+ TEMC + +CLR RE
Sbjct: 3616 QSQRMRYQLITEMCTTGVCLRGECRE 3641
>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
protein Y53C10A.9 protein.
Length = 1564
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 327 GRPMECSVHSKSKTMKTSIVLFFLLVACTL 238
G P SK KT++++ V F ++++CT+
Sbjct: 354 GTPTSALFSSKKKTLQSAAVYFGIMISCTV 383
>Z73098-10|CAA97336.2| 391|Caenorhabditis elegans Hypothetical
protein T21C9.9 protein.
Length = 391
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -3
Query: 270 VLFFLLVACTL--GAESACICTADYRPVCGTNGRTYSN 163
++FF + TL G + C C P CG G YS+
Sbjct: 1 MIFFSVALTTLLVGLSNGCFCPPVISPSCGCGGGGYSS 38
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -3
Query: 231 ESACICTADYRPVCGTNGRTYSNRCQLKC 145
+ C+ T+D+ PVC RC+ +C
Sbjct: 416 DGTCMHTSDHSPVCQCKNGFIGKRCEKEC 444
>U23528-7|AAK31383.2| 254|Caenorhabditis elegans Hypothetical
protein B0034.1 protein.
Length = 254
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 121 VVGKCGSRTFQLAPVAVSPAVGTTNRPIIGGANTGTFSPQSAGDE 255
++G G R+F LA A+G+ N ++GG G G E
Sbjct: 45 ILGFGGDRSFNLAGNRAGFALGSNNGALVGGQRVGVDGGIGGGRE 89
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -3
Query: 231 ESACICTADYRPVCGTNGRTYSNRCQLKC 145
+ C+ T+D+ PVC RC+ +C
Sbjct: 416 DGTCMHTSDHSPVCQCKNGFIGKRCEKEC 444
>Z81556-1|CAB04524.1| 965|Caenorhabditis elegans Hypothetical
protein F58G1.1 protein.
Length = 965
Score = 27.1 bits (57), Expect = 3.4
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Frame = +1
Query: 7 PASVPPSPF*TQPLKSGPSRVNPG---RLATLN----SHVTPAWPVVGKCG 138
P +VPP P TQPL+S N RL LN + + P GKCG
Sbjct: 20 PPAVPPVPVPTQPLRSEYQTSNDACIKRLEELNIAPAAKLYPTPTEPGKCG 70
>U41559-10|AAC24264.2| 371|Caenorhabditis elegans Hypothetical
protein C26B2.4 protein.
Length = 371
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 156 GTCCCKSCRWYHKQAYNRRCKYRHFQPPKC 245
GT CC SC+ + ++ Y K+ ++ C
Sbjct: 27 GTICCPSCKGFFRRVYMSDKKFECYRGNMC 56
>AL032660-2|CAA21751.1| 690|Caenorhabditis elegans Hypothetical
protein Y70G10A.3 protein.
Length = 690
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -3
Query: 222 CICTADYRPVCGTN-GRTYSNRCQLKCARAT 133
C C ++ PVC N G Y + C C T
Sbjct: 457 CHCKMEWNPVCDRNTGHMYYSACHAGCTGRT 487
>AL032641-4|CAA21647.1| 454|Caenorhabditis elegans Hypothetical
protein Y5F2A.4 protein.
Length = 454
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +3
Query: 168 CKSCRWYHKQAY--NRRCKYRHFQPPKCRR 251
CK C Y +Q +R K HF P KC +
Sbjct: 189 CKPCDSYFRQRVQLDRHIKKAHFHPTKCSK 218
>AC006655-1|AAF39875.1| 391|Caenorhabditis elegans Serpentine
receptor, class w protein6 protein.
Length = 391
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 321 PMECSVHSKSKTMKTSIVLFFLLVACTL 238
PM VH+ SK + +F L+ACTL
Sbjct: 164 PMSGFVHTVSKPRFGFLAIFITLIACTL 191
>AL021475-1|CAA16312.1| 758|Caenorhabditis elegans Hypothetical
protein Y32F6B.1 protein.
Length = 758
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = -3
Query: 237 GAESACICT-ADYRPVCGTNGRTYSNRCQLKCA 142
G C+C PVC +G Y + C CA
Sbjct: 511 GCRDDCMCEQTPLYPVCDVSGSAYYSPCHAGCA 543
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
F30H5.3 protein.
Length = 1599
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Frame = -3
Query: 249 ACT---LGAESACICTADYRPVCGTNGRTYSNRCQLKCARATFAYDGPCGSN 103
ACT L + S C C A VC + Y N + +G C SN
Sbjct: 865 ACTYDQLSSNSVC-CGATNMDVCPEGEKAYVNAADMGVRECLINVEGSCPSN 915
>AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 260 protein.
Length = 398
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = +3
Query: 57 AVPGKSGXSGNPKFTCYSRMARRRQMWLSHISVGTCCCKSCRWYHKQAYNRRCKYRHFQP 236
A P S S PK C + + + ++ G C C + ++A + +YR +
Sbjct: 23 ATPSSSSPSSIPK--CLTERCKVCEDRSNNSRYGAPACLGCTVFFRRAVVNKMQYRCLRE 80
Query: 237 PKC 245
KC
Sbjct: 81 QKC 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,993,799
Number of Sequences: 27780
Number of extensions: 205974
Number of successful extensions: 657
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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