Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P12
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              34   4e-04
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   3.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   5.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   5.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   5.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    20   7.1  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              20   9.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   9.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 34.3 bits (75), Expect = 4e-04
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 216 CTADYRPVCGTNGRTYSNRCQL 151
           C   +RPVC +NG+ Y+N C+L
Sbjct: 110 CPRRHRPVCASNGKIYANHCEL 131


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -3

Query: 255 LVACTLGAESACICTADYRPVCGTNGRTYSNRCQLKCARATF 130
           +V C  G +  C    +Y  +C    +   N+C + C+   F
Sbjct: 58  IVQCAKGPDELCGGPQNYLGICAEGMQCSCNKC-IGCSAEKF 98


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 245 ALWGLKVPVFAPPIIGLF 192
           A+W L   + +PP++G F
Sbjct: 162 AVWVLAGAITSPPLLGCF 179


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 177 RTYSNRCQLKCARATFA 127
           +++SN  Q +CA  T+A
Sbjct: 37  KSHSNVYQYRCANCTYA 53


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 192 KQAYNRRCKYRHFQPPKCRRRGGKIERLKSSLFSILNELN 311
           +++Y     YR ++     R   +IER +S    I++ L+
Sbjct: 280 QRSYKNENSYRKYRETSKERSRDRIERERSREPKIISSLS 319


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 145 TFQLAPVAVSPAVGTTNRPIIG 210
           T  L+P AVS   G  + P+IG
Sbjct: 106 TGDLSPAAVSYTSGFYHIPVIG 127


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 103 HVNLGLPDXPDL 68
           H NL  PD PD+
Sbjct: 408 HSNLTTPDDPDI 419


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 70  NPGRLATLNS 99
           NPG LAT+N+
Sbjct: 97  NPGTLATVNA 106


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 69  YPGRPGFERLSLKW 28
           +P    FE+L LKW
Sbjct: 259 HPTYDWFEKLELKW 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,086
Number of Sequences: 438
Number of extensions: 2126
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)