Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P11
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              29   4.2  
SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)               28   9.8  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            28   9.8  

>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +1

Query: 190 GIVFKVVCKCSALLLPWRSRCVFKMALFHFIPFRKHNTNMPHNRLPVSINLLNSMQYLCS 369
           G++ +V  + +A+L+  R +CVF         F + +    H+R  V  N  N + +L S
Sbjct: 553 GLLGEVRRRIAAVLIVHRHQCVFAYVRLRLFAFARLHYPTLHSRRVVDTNNANRLHFLTS 612


>SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)
          Length = 1084

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = -1

Query: 284 GMKWKRAILKTHRLLQ-GSSSALHLHTTLNTIPPLGTXRRIANRRFDIXLXMTIWECGE 111
           G+K+KR I+  H+ L+ G ++ L++   +N+   + T  R   RRF +   + +++ G+
Sbjct: 16  GVKYKREIMSIHQGLEYGKAANLNVFYPVNS-TSVATVNRYQGRRFWLVSNVLLYKDGD 73


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = +2

Query: 524 VVYSTKNS*HLHHKAHNEEHSRLSAVH*H*NKINVHLQLLNHRIH*RKSEAVYKII 691
           V+Y   +  H HH  H+ +H+     H H +  + H    +H  H   +  +   I
Sbjct: 205 VIYRRHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHHYHHHHHHHNNNTIITTI 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,431,706
Number of Sequences: 59808
Number of extensions: 396509
Number of successful extensions: 878
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)