Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P11
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14400.3 68417.m02222 ankyrin repeat family protein contains ...    29   2.6  
At4g14400.2 68417.m02221 ankyrin repeat family protein contains ...    29   2.6  
At4g14400.1 68417.m02220 ankyrin repeat family protein contains ...    29   2.6  
At4g14390.1 68417.m02219 ankyrin repeat family protein contains ...    28   6.1  
At1g51480.1 68414.m05794 disease resistance protein (CC-NBS-LRR ...    28   6.1  
At5g07130.1 68418.m00813 laccase, putative / diphenol oxidase, p...    28   8.0  

>At4g14400.3 68417.m02222 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 604

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 249 VCFQNGSFPLHSFSETQH 302
           VC Q+GSFP+HS ++ +H
Sbjct: 259 VCDQDGSFPIHSAAKNEH 276


>At4g14400.2 68417.m02221 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 604

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 249 VCFQNGSFPLHSFSETQH 302
           VC Q+GSFP+HS ++ +H
Sbjct: 259 VCDQDGSFPIHSAAKNEH 276


>At4g14400.1 68417.m02220 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 670

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 249 VCFQNGSFPLHSFSETQH 302
           VC Q+GSFP+HS ++ +H
Sbjct: 325 VCDQDGSFPIHSAAKNEH 342


>At4g14390.1 68417.m02219 ankyrin repeat family protein contains
           Pfam profile: PF00023 ankyrin repeat
          Length = 694

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 249 VCFQNGSFPLHSFSETQHK 305
           VC Q+GSFP+H+ +E  H+
Sbjct: 354 VCDQDGSFPIHTAAEKGHE 372


>At1g51480.1 68414.m05794 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 941

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = +1

Query: 202 KVVC--KCS---ALLLPWRSRCVFKMALFHFIP---FRKHNTNMPHNRLPVSINLLNSMQ 357
           K+ C  KCS    LLLP+       +  F F+P       +TNM    LP  I+ L S+Q
Sbjct: 614 KISCSSKCSNLSTLLLPYNKLVNISVGFFLFMPKLVVLDLSTNMSLIELPEEISNLCSLQ 673

Query: 358 YL 363
           YL
Sbjct: 674 YL 675


>At5g07130.1 68418.m00813 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 484

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = -3

Query: 315 MRHICVVFPKRNEVEKSHFENTPT 244
           + ++  VFPK+N + +++++ TPT
Sbjct: 304 INNVSFVFPKQNSIMQAYYQGTPT 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,700,213
Number of Sequences: 28952
Number of extensions: 269838
Number of successful extensions: 602
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)