Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P10
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.5  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   7.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.7  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 200 KNTSNICTANTTMKHQKYLIASLSTKKKSLNNFLIYSFIYIQKKRYY 340
           K  S   T     K +K +I+SLS      NN   Y++    KK YY
Sbjct: 297 KERSRDRTERERSKERK-IISSLSNNYNYNNNNYKYNYNNYNKKLYY 342


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/52 (21%), Positives = 24/52 (46%)
 Frame = +2

Query: 140 ISDITLISYSFFFKILPFIRKNTSNICTANTTMKHQKYLIASLSTKKKSLNN 295
           ++ I++ S + F  IL F+++           +KH    +  +  +KK L +
Sbjct: 329 LTSISVESNTMFINILKFLKQKYVKNSKLEKVIKHDILRMLIIDLRKKQLKS 380


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 1   SIGAHYAPRGRTRTWNVTSVSNTGLFI 81
           S+G+H+  R   RT N   + +  LF+
Sbjct: 379 SMGSHHGQRVMVRTCNGLELRDPSLFV 405


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 254 LIASLSTKKKSLNNFLIYSFIYIQKKRYYIFRFM 355
           +I+SLS K    NN   Y++    KK YY   ++
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNCKKLYYNINYI 114


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 64  NTGLFIYRLSKIYLHK 111
           N  LFIY LS   LH+
Sbjct: 121 NPNLFIYALSVAILHR 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,086
Number of Sequences: 438
Number of extensions: 3760
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)