Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P09
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.05 |||S. pombe specific multicopy membrane protein family...    27   0.85 
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   2.0  
SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces pom...    25   4.5  
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    25   6.0  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   6.0  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    24   7.9  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    24   7.9  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    24   7.9  

>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 181 LFVILARPMYVLMTFYGAESTQTRV*SYWDI*KLLWNG*SFYSTYTI 321
           LFV  A   Y +M+FYG      ++   W+I   ++ G  F++ Y +
Sbjct: 318 LFVTFAPLSYPVMSFYGVRGILLKL--IWNIYTFVYYGLPFFAVYRL 362


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = +1

Query: 22  ILSFFANRHLISQSSSLTKITNSRRFNXITKXACIFKKLVLFDTN-----ILTGFDFSLF 186
           I+S F N+ L+ Q+++  K +N    N  T    ++    LF+ +     +LT FD+ L 
Sbjct: 256 IISVFVNKGLVDQAAAYLKNSNLNERNLPTIYTTVWLLQRLFEAHHSLDPLLTIFDYYLS 315

Query: 187 V 189
           V
Sbjct: 316 V 316


>SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 197 ANITNNEKSKPVKILVSKSTSFLNMHAXFVIXLKRR 90
           A +  NE    +KI+ +++T+F ++   FV  L+ R
Sbjct: 128 AALLKNEMKYAIKIVPTRNTNFSHLRGGFVRGLQSR 163


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 255 LIILGYLEITLEWLIFLFDLYNITMYL 335
           L+  G + + L W  F  DL+ +TMY+
Sbjct: 191 LLGAGTVFVPLMWCYFTHDLHLVTMYI 217


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 28   SFFANRHLISQSSSLTKITNSRRFNXITKXACIFKKL 138
            +F  N H +S SSS+T  + S + + I     I++K+
Sbjct: 1609 AFIWNPHNVSASSSVTNDSESSKLSLIHNKPPIYQKV 1645


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -1

Query: 313 KSNKKISHSRVISKYPSMIKLWSECSRRHRMSLERTLAGLISQTTKNRSRLKYWYQKV 140
           + +KK SH  + S+    +   +    RHR   E  ++ L S+ TK  S+++  Y+++
Sbjct: 297 RKSKKASHKYLSSRTAPNVDFGNFAKERHR---ENDVSELYSK-TKRTSKIRELYKEI 350


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 290 MANLFIRLIQYYNVFNRLLVKISGHSILLTHNSSA 394
           +A +  RL + YN++ + +   +GH  LL H+  A
Sbjct: 493 LAAVVKRLNRLYNLYKKNVPSFNGHVSLLGHSLGA 527


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 11  KHNKYFLSSQTDISSLNHHLSQKS 82
           +  K  LSS T   SLN H+S++S
Sbjct: 428 ERKKSGLSSSTSEESLNRHISKRS 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,247
Number of Sequences: 5004
Number of extensions: 29502
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)