Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P09
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7393| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.63 
SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   0.63 
SB_17155| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23)               27   5.9  
SB_16706| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_38153| Best HMM Match : DUF590 (HMM E-Value=2.7e-11)                27   7.8  

>SB_7393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 313 KSNKKISHSRVISKYPSMIKLWS-ECSRRHRMSLERTLAGLISQTT 179
           K   K+SH+ V+   P ++     E  ++H+ +LER + GL  + T
Sbjct: 33  KIYSKVSHNDVLQTKPEVVHFAGFEVGKKHKQTLERFVPGLFIEVT 78


>SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 49  LISQSSSLTKITNSRRFNXITKXACIFKKLVLFDTNIL 162
           L S  SSL+K+TN    N I+  A   ++LV++  NI+
Sbjct: 226 LSSSRSSLSKLTNGHIMNLISNDAKRMERLVMYTMNIV 263


>SB_17155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 3   IHKNITNTFFLRKQTSHLSIIISHKNHKLASLQXN 107
           IHK+  +T    +Q  H    I  +NH+L S + N
Sbjct: 236 IHKDYKSTLMYNEQVYHKMRTIRSQNHQLGSYEIN 270


>SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23)
          Length = 1024

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 156 YFNRLRFFVVCDISPANVRSNDIL-WRREH-SDQSLIILGYLEITLEWLIFLFDLYNI 323
           YF R R+  VC I     ++   L + + H SD    I GY E   EW   L D+Y +
Sbjct: 113 YF-RWRYVNVCAILEVESKTRSALPYPKTHKSDPVAFIRGYHEYMTEWEPALEDVYKL 169


>SB_16706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 156 YFNRLRFFVVCDISPANVRSNDIL-WRREH-SDQSLIILGYLEITLEWLIFLFDLYNI 323
           YF R R+  VC I     ++   L + + H SD    I GY E   EW   L D+Y +
Sbjct: 42  YF-RWRYVNVCAILEVESKTRSALPYPKTHKSDPVAFIRGYHEYMTEWEPALEDVYKL 98


>SB_38153| Best HMM Match : DUF590 (HMM E-Value=2.7e-11)
          Length = 733

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 276 EITLEWLIFLFDLYNI---TMYLIVC*LKYQVTAYY*PTTHRPAE 401
           E+T +W +  F+++NI   T+YL     K    AY   T   P+E
Sbjct: 340 EVTRDWCVLAFNIFNIVWATLYLEAWKRKSAELAYRWGTLDMPSE 384


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,436,187
Number of Sequences: 59808
Number of extensions: 203178
Number of successful extensions: 452
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)