Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P09
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical pr...    29   0.98 
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    27   3.9  
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ...    27   3.9  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    27   3.9  
Z47808-6|CAA87776.1|  246|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical
           protein T02G6.4 protein.
          Length = 323

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -1

Query: 307 NKKISHSRVISKYPSMIKLWSECSRRHRMSLERTLAGLISQTTKN----RSRLKYWYQKV 140
           N+K+   ++  KYPS IKL S C+      +  TL   +SQ         SR +Y+ +K 
Sbjct: 20  NRKLKKKKLTYKYPSRIKLNSSCA-----VIINTLINKVSQDHLGIHAINSRTEYFLKKS 74

Query: 139 LVF 131
            VF
Sbjct: 75  FVF 77


>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1651

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 289 SRVISKYPSMIKLWSECSRRHRMSLERTLAGLIS 188
           S+ I ++ S+   WS  SRRH+   E   A L +
Sbjct: 674 SQEIDRFESVYGKWSTYSRRHQSGFEANFASLFT 707


>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           a protein.
          Length = 1650

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 289 SRVISKYPSMIKLWSECSRRHRMSLERTLAGLIS 188
           S+ I ++ S+   WS  SRRH+   E   A L +
Sbjct: 674 SQEIDRFESVYGKWSTYSRRHQSGFEANFASLFT 707


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           c protein.
          Length = 1651

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 289 SRVISKYPSMIKLWSECSRRHRMSLERTLAGLIS 188
           S+ I ++ S+   WS  SRRH+   E   A L +
Sbjct: 674 SQEIDRFESVYGKWSTYSRRHQSGFEANFASLFT 707


>Z47808-6|CAA87776.1|  246|Caenorhabditis elegans Hypothetical
           protein D2013.10 protein.
          Length = 246

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 322 ILYKSNKKISHSRVISKYPSMIKLWSECSRRHR 224
           I Y  +K    S V+ K+P  I  W +   +HR
Sbjct: 119 ICYTISKLFGRSFVLQKFPERIAKWQDDLSKHR 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,742,146
Number of Sequences: 27780
Number of extensions: 159783
Number of successful extensions: 418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)