Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_P09
(409 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40940.1 68415.m05055 ethylene response sensor / ethylene-res... 30 0.52
At4g29980.1 68417.m04264 expressed protein 29 0.91
At3g10915.3 68416.m01316 reticulon family protein low similarity... 29 1.2
At3g10915.1 68416.m01314 reticulon family protein low similarity... 29 1.2
At1g48540.2 68414.m05428 leucine-rich repeat family protein 28 2.1
At1g48540.1 68414.m05427 leucine-rich repeat family protein 28 2.1
At5g28190.1 68418.m03413 hypothetical protein 27 3.7
At3g10915.2 68416.m01315 reticulon family protein low similarity... 27 3.7
At5g55690.1 68418.m06943 MADS-box protein (AGL47) 27 6.4
At4g25520.1 68417.m03680 transcriptional co-regulator family pro... 26 8.5
At3g47560.2 68416.m05178 esterase/lipase/thioesterase family pro... 26 8.5
At3g47560.1 68416.m05177 esterase/lipase/thioesterase family pro... 26 8.5
At3g42850.1 68416.m04489 galactokinase, putative contains some s... 26 8.5
>At2g40940.1 68415.m05055 ethylene response sensor /
ethylene-responsive sensor (ERS) identical to ethylene
response sensor (ERS) [Arabidopsis thaliana] GI:1046225
Length = 613
Score = 30.3 bits (65), Expect = 0.52
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 186 CDISPANVRSNDILWRREHSDQSLIILGYLEITLEWLIFL 305
CD +V +D+L + ++ +LI L Y I LE + F+
Sbjct: 4 CDCFETHVNQDDLLVKYQYISDALIALAYFSIPLELIYFV 43
>At4g29980.1 68417.m04264 expressed protein
Length = 169
Score = 29.5 bits (63), Expect = 0.91
Identities = 11/22 (50%), Positives = 19/22 (86%)
Frame = +2
Query: 332 FNRLLVKISGHSILLTHNSSAG 397
F+R+ +SGHSI++T+NS++G
Sbjct: 110 FSRIPTLLSGHSIVVTNNSASG 131
>At3g10915.3 68416.m01316 reticulon family protein low similarity to
rS-Rex-s [Rattus norvegicus] GI:1143717,
neuroendocrine-specific protein C [Homo sapiens]
GI:307311; contains Pfam profile PF02453: Reticulon
Length = 156
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 156 YFNRLRFFVVCDISPANVRSNDILWRREHSDQSLIILGYLEITLEWLIFLF 308
+ RLRF ++ A ++ +LWRR H +II+ T+ WLIF F
Sbjct: 19 WVGRLRFISSWVVAKAT--ADLLLWRRRHLSLGVIIIS----TVAWLIFEF 63
>At3g10915.1 68416.m01314 reticulon family protein low similarity to
rS-Rex-s [Rattus norvegicus] GI:1143717,
neuroendocrine-specific protein C [Homo sapiens]
GI:307311; contains Pfam profile PF02453: Reticulon
Length = 220
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 156 YFNRLRFFVVCDISPANVRSNDILWRREHSDQSLIILGYLEITLEWLIFLF 308
+ RLRF ++ A ++ +LWRR H +II+ T+ WLIF F
Sbjct: 19 WVGRLRFISSWVVAKAT--ADLLLWRRRHLSLGVIIIS----TVAWLIFEF 63
>At1g48540.2 68414.m05428 leucine-rich repeat family protein
Length = 1051
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 37 ANRHLISQSSSLTKITNSRRFNXITKXACIFKKLVLFDTNI 159
A RH+ + S + +ITNS +N + +C +LVL D ++
Sbjct: 149 ALRHVFA--SRIAEITNSPEWNKLAVISCACNRLVLMDESL 187
>At1g48540.1 68414.m05427 leucine-rich repeat family protein
Length = 1063
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 37 ANRHLISQSSSLTKITNSRRFNXITKXACIFKKLVLFDTNI 159
A RH+ + S + +ITNS +N + +C +LVL D ++
Sbjct: 149 ALRHVFA--SRIAEITNSPEWNKLAVISCACNRLVLMDESL 187
>At5g28190.1 68418.m03413 hypothetical protein
Length = 839
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 281 YSGMANLFIRLIQYYNVFNRLLVKISG 361
++ AN F + ++ NVFN +L+KI G
Sbjct: 663 WAEFANTFSYVSEHVNVFNTILIKIRG 689
>At3g10915.2 68416.m01315 reticulon family protein low similarity to
rS-Rex-s [Rattus norvegicus] GI:1143717,
neuroendocrine-specific protein C [Homo sapiens]
GI:307311; contains Pfam profile PF02453: Reticulon
Length = 226
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 222 ILWRREHSDQSLIILGYLEITLEWLIFLF 308
+LWRR H +II+ T+ WLIF F
Sbjct: 45 LLWRRRHLSLGVIIIS----TVAWLIFEF 69
>At5g55690.1 68418.m06943 MADS-box protein (AGL47)
Length = 277
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -1
Query: 319 LYKSNKKISHSRVISKYPSMIKLWSECSRRHRMSLERTLAGLISQTTKNRSR 164
L K+N K+ + +KYP+ K +CS ++ + I + T NR++
Sbjct: 96 LEKNNTKVEKPTIATKYPTWDKKLDQCSLNDLYAVFMAVENKIQEAT-NRNQ 146
>At4g25520.1 68417.m03680 transcriptional co-regulator family
protein contains similarity to GP|18033922|gb|AAL57277
SEUSS transcriptional co-regulator [Arabidopsis
thaliana]
Length = 748
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 292 HSRVISKYPSMIKLWSECSRRH-RMSLERTLAGLISQ 185
H R+I I W C+RRH + L R +A ++Q
Sbjct: 327 HLRIIFSQDLKILSWEFCARRHEELLLRRLIAPQVNQ 363
>At3g47560.2 68416.m05178 esterase/lipase/thioesterase family
protein low similarity to cinnamoyl ester hydrolase CinI
[Butyrivibrio fibrisolvens] GI:1622732; contains
Interpro entry IPR000379
Length = 318
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 272 FRNYSGMANLFIRLIQYYNVFNRLLVKISGHS 367
+ NY+ A+ +IQY++ NR++ I GHS
Sbjct: 108 YGNYNYEADDLHSVIQYFSNLNRVVTIILGHS 139
>At3g47560.1 68416.m05177 esterase/lipase/thioesterase family
protein low similarity to cinnamoyl ester hydrolase CinI
[Butyrivibrio fibrisolvens] GI:1622732; contains
Interpro entry IPR000379
Length = 265
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 272 FRNYSGMANLFIRLIQYYNVFNRLLVKISGHS 367
+ NY+ A+ +IQY++ NR++ I GHS
Sbjct: 81 YGNYNYEADDLHSVIQYFSNLNRVVTIILGHS 112
>At3g42850.1 68416.m04489 galactokinase, putative contains some
similarity to galactokinase [Pasteurella multocida]
SWISS-PROT:P57899
Length = 964
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -1
Query: 325 VILYKSNKKISHSRVISKYPSMIKLWSECSRRH 227
++L ++ H+ V +PS KLW RH
Sbjct: 505 LVLLMPTREACHAAVQRNHPSKQKLWKHAEARH 537
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,994,896
Number of Sequences: 28952
Number of extensions: 141127
Number of successful extensions: 369
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -