Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P08
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    27   1.9  
SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.7  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    25   7.5  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    25   7.5  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.5  
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    25   7.5  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    25   7.5  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    25   10.0 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   10.0 

>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 96  FLSYFFALNNAPF*LM 49
           F+SYFF+L N PF LM
Sbjct: 123 FVSYFFSLKNNPFCLM 138


>SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 124

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 125 FSSKPCISMNKTQKMSDKFRP*PFYKYIRLQITRHLIRRPFRRSLSHLQL 274
           F +KP    N+ +  +D FRP  F   +  ++T+ L R   + S  H +L
Sbjct: 76  FKTKPHREQNQYRPTADSFRPLSFAS-MESKLTQRLSRHLSKTSSRHSRL 124


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 181 KFITHFLCFIHTDTRLTRKLIIN 113
           +++ +F C + T+T LT++L IN
Sbjct: 118 EYLKNFKCVVVTETSLTKQLEIN 140


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 416 AECLFKSLSSRVCELVSHNYFEWYDLLFYCILM 318
           A+C+F + S+     V ++ F+   L+FY ++M
Sbjct: 65  ADCIFTAGSANEYSAVQNSVFQVSSLMFYGLMM 97


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +2

Query: 278 ATTKKKNYNYNSTTLKYNKKVNHTIQ 355
           AT KK++Y YN+   +  ++ ++T+Q
Sbjct: 257 ATYKKEHYEYNALVAELEERNDNTLQ 282


>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +2

Query: 167 MSDKFRP*PFYKYIRLQITRHLIRRPFRRSLSHLQLLATTKKK 295
           M +K+RP   + +IRL   + L+++ + +++  L+ LA    K
Sbjct: 90  MPEKYRPTYTHYFIRLLHDKRLLQKCYTQNIDTLERLAGVPDK 132


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 229 MSGNL*SNVFVKWSWPKFITHFLCFIHT 146
           ++G   +  ++ W W ++IT F+ F  T
Sbjct: 240 IAGGFLAKSYLGWRWTEYITSFMGFFST 267


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 236 RRPFRRSLSHLQLLATTKKKNYNYNSTTLKYNKKVNHTIQNN 361
           + P+R+  S  Q   +      N NS+    N +++ TI+N+
Sbjct: 14  KNPYRKGHSRRQSRHSIPSDELNSNSSKSLNNDRISRTIENS 55


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 194 FYKYIRLQITRHLIRRPFRRSLSHLQ 271
           FY+ + L      IR PF R+L HL+
Sbjct: 623 FYRPLSLSYITTEIRSPFERNLFHLK 648


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,132
Number of Sequences: 5004
Number of extensions: 30987
Number of successful extensions: 74
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)