Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P08
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45480.1 68415.m05656 expressed protein                             30   1.2  
At5g50500.1 68418.m06255 hypothetical protein                          27   8.5  
At3g61800.1 68416.m06935 expressed protein                             27   8.5  

>At2g45480.1 68415.m05656 expressed protein
          Length = 429

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 197 YKYIR--LQITRHLIRRPFRRSLSHLQLLATTKKKNYNYNSTTLKYNKKVNH 346
           Y+YI   L++  HL+  P   SL      A +   NYNY+S++L  NK V H
Sbjct: 38  YRYIEAGLRVPHHLVV-PIWNSL------ALSSSSNYNYHSSSLLSNKGVTH 82


>At5g50500.1 68418.m06255 hypothetical protein 
          Length = 135

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 447 YRSVCLENVNIKRXYIFXIRKFKSYL 524
           YR++C  ++++   Y+F    FK+YL
Sbjct: 99  YRTLCKNHLSLSTIYVFEPMHFKAYL 124


>At3g61800.1 68416.m06935 expressed protein 
          Length = 664

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 183 GHDHFTNTLDYKLPDI*YEGHSVEACRICNY*QRRKKKTITIIR 314
           G D+  NTL  K PD+        A RI    Q R+ KT  I+R
Sbjct: 140 GFDYLKNTLKLKFPDL-----QANAARIQRERQEREMKTKEILR 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,007,240
Number of Sequences: 28952
Number of extensions: 141050
Number of successful extensions: 255
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)