Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P07
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   3.3  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   5.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 373 LSLMITPARDVLRFQTFLLVWRMVNPHLTIV 465
           LSL +T  +  + FQ     W+  NP L ++
Sbjct: 43  LSLSLTETQVKIWFQNRRTKWKKQNPGLDVI 73


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 208 SSRNSTIMN*NYKFKHYY 155
           S  N+TI N NY  K YY
Sbjct: 317 SLSNNTIHNNNYNKKLYY 334


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 217 TSIINCTVDKIIYIMIHQTST*AGISVDQH 306
           T I NC   KI +  +H   +   I +D H
Sbjct: 321 TDIQNCDSVKIKFETLHTMDSSDTIDIDSH 350


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 453 VRIHHSPYQ*KRLKSQYVARRCNHQR 376
           V+ HH PYQ ++ + Q   +R   +R
Sbjct: 156 VQDHHRPYQQQQQQQQRQQQRQEERR 181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,575
Number of Sequences: 438
Number of extensions: 2602
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)