Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P05
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30040.1 68414.m03673 gibberellin 2-oxidase / GA2-oxidase (GA...    31   0.88 
At1g29240.1 68414.m03576 expressed protein contains Pfam profile...    29   3.6  
At3g50410.1 68416.m05514 Dof-type zinc finger domain-containing ...    28   4.7  
At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containi...    28   4.7  

>At1g30040.1 68414.m03673 gibberellin 2-oxidase / GA2-oxidase
           (GA2OX2) identical to GI:4678368 ga2ox2
          Length = 341

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 336 YKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGF 223
           YK +P+     SH+  +  L +P+ K RI+++C   GF
Sbjct: 20  YKPVPVLT---SHSIPVVNLADPEAKTRIVKACEEFGF 54


>At1g29240.1 68414.m03576 expressed protein contains Pfam profile:
           PF05097 protein of unknown function (DUF688)
          Length = 577

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 451 SRNTFMNKLFSSLRRTRLEQSHYACN*SPSS 543
           SR+  M++   + +   +EQSHYA N  PS+
Sbjct: 172 SRDFMMSRFLPAAKAMTVEQSHYASNRKPST 202


>At3g50410.1 68416.m05514 Dof-type zinc finger domain-containing
           protein 
          Length = 253

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 348 NGIPYKDLPICNIRVSHNNTI-FTLTEPDGKVRIIRSCG 235
           NG+P +  P+   + S +N +  T+TE DGK   +  CG
Sbjct: 105 NGVPLQTTPVLFPQSSISNGVTHTVTESDGKGSALSLCG 143


>At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 895

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 420 IDLDSALKTKQNLFPTLESDYQLYNGIPYKD 328
           + + S+L T  +   +LE  Y+L+ GIP+KD
Sbjct: 485 LTVGSSLFTLYSKCGSLEESYKLFQGIPFKD 515


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,301,139
Number of Sequences: 28952
Number of extensions: 215648
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)