Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P03
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    29   0.56 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.3  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   5.2  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    25   6.9  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   9.1  

>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
 Frame = +1

Query: 277 LCGFTRFIFD---ETCRIFPKHNSCLPVIHTLPVDL*INWYRKP------RIRKHIIFHC 429
           LC FT   FD   ET RIFP +   LP   TLPV   +++ R         IR       
Sbjct: 225 LCQFTP-CFDSAKETDRIFPLYIKYLPPCVTLPVPSLLSFARSVLLTVSFEIRIRFSAEP 283

Query: 430 SIPGALQVLTRNIQIRSVCSVIE*QRIAKLGNINKIIWL 546
            IP     +T + Q   V S +   R+ KLG  +K+ +L
Sbjct: 284 LIPRNCTDVTESAQ--EVLSKLGRSRVVKLGKSDKLSYL 320


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 11   FKY*GKVVLRQSVHSLXFLNSFCLF--RFHNRISQ 109
            FK+ GK      +H + FLN+FCL   R  N++S+
Sbjct: 3076 FKHLGKTSYFSCLHFIRFLNTFCLIFGRDANKLSK 3110


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 75  FACSASTIASVKIIXSXHT 131
           F CSAS++ ++++I S HT
Sbjct: 255 FLCSASSVVALQLIRSWHT 273


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 432 ATMKNNVLSDSWFSI-PIDLQIDW 364
           AT   N+ SDS F+  P D  +DW
Sbjct: 281 ATQMKNITSDSSFTFCPTDKDVDW 304


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 260 LDVFVYSAVSPALYLMKHVAFFQNITVACL*FIHYQSICRSI 385
           +D + +  +SP +YL+  +A   N T+       Y SI  SI
Sbjct: 667 IDSYDHVPISPLIYLLHSLALLTNGTLFSTVHAAYSSILSSI 708


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,729
Number of Sequences: 5004
Number of extensions: 43063
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)