Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P03
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            29   4.2  
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  
SB_59386| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_27731| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 351 HRQATVMFWKNATCFIKYKAGETAEYTN 268
           H  +TV + KN T  + YKA   A+YTN
Sbjct: 762 HNGSTVEYHKNLTQSLFYKASGEAQYTN 789


>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 840

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/40 (22%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -1

Query: 605 YFALISKCYF*SFTLAANCKSHIILFIFPSFAI--RCYSI 492
           +FA+ ++C+   + + + C   +  +++P F++  RC+S+
Sbjct: 37  FFAMFTRCFRYVYPVFSLCLPGVFRYVYPVFSLFTRCFSL 76


>SB_59386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1037

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 447 KCAGYATMKNNVLSDSWFSIP 385
           KC+G + M   VL+D+W S P
Sbjct: 436 KCSGRSDMCKEVLNDTWVSFP 456


>SB_27731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +3

Query: 9   FLNTKAKSSSDNQFILSXFSILFACSASTIASVKIIXSXHTSQNIH-AX*KINTNVEIT* 185
           F+NT   +  D   I   +++  + + +T  +VKI  + H  Q  H     INTN  I  
Sbjct: 11  FINTNTSTKVDINNIDINYNMNTSINTNTRTNVKISITTHQHQQQHDINISINTNNNIDI 70

Query: 186 XFHTSVRNXNNSFNLSTSV 242
               ++ N N + N++ ++
Sbjct: 71  NITININN-NIAINITINI 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,584,019
Number of Sequences: 59808
Number of extensions: 301833
Number of successful extensions: 494
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)