Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O24
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    70   4e-13
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    31   0.23 
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    30   0.39 
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    27   3.7  

>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
 Frame = -2

Query: 481 LKNVQKVAFSSNTTNNMDTTYMEIPLYDVEK-QQPLEKRKA---RLHYQSRKRGMLENDL 314
           L N+  +  S+   N M     E    D+++  +  E R A   RL YQSRKRG+LE DL
Sbjct: 7   LSNITTLLRSARCMNRMPQLRFEHTKGDLKRVNRSYETRDAMLARLKYQSRKRGILETDL 66

Query: 313 LLSTFAKKYLXGFNEXQTMMYDRLINSPSNDWDIFYWIV-EKKPTRXEFDNEIMNLLXXH 137
           LLS FAK  +  +       YD+L++ P  DWDI YW   E++       +++   L  +
Sbjct: 67  LLSNFAKDQIDKYPVSLLREYDQLLDEP--DWDILYWCSGEREAPEKWKSSQVFKELSKY 124

Query: 136 AKNEDQIALRQPDL 95
            +++    LR P+L
Sbjct: 125 CRSQRNHTLRMPEL 138


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -2

Query: 472 VQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPL-EKRKARLHYQSRKRGMLENDLLLSTFA 296
           +Q + F  +  NN+DTT ++  L D+ K+  +        H+ + + G ++  L+ + F 
Sbjct: 654 LQAIIFDFSAVNNLDTTAVQ-SLIDIRKELEIYANETVEFHFTNIRSGWIKRTLVAAGFG 712

Query: 295 K 293
           K
Sbjct: 713 K 713


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 25/93 (26%), Positives = 37/93 (39%)
 Frame = -2

Query: 511 TRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRG 332
           TR   L+   LK+++ +    +    MD    ++ +   +    LEKRKA LH Q  K  
Sbjct: 7   TREWILTLRLLKDLEDMDSIGDNVTEMDAFVRDLTM---KPYAELEKRKAELHAQKLKLV 63

Query: 331 MLENDLLLSTFAKKYLXGFNEXQTMMYDRLINS 233
                LL   +    L  +   Q   Y  L NS
Sbjct: 64  QKRQQLLRDNY--NVLVDYARNQDAFYQLLENS 94


>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 508 RTLNLSYNALKNVQKVAFSSNTTNNMDT-TYMEIPLYDVEKQQPLEKRKARLHYQSRKR 335
           R+L  +YN    +     SS++T N +     ++P    E+++   KRK  +   +RKR
Sbjct: 144 RSLIETYNLSSRISSSDNSSSSTGNEEVRNRSKLPSSKKEREELFRKRKEEMILAARKR 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,204
Number of Sequences: 5004
Number of extensions: 52805
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)