Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O24
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0034 + 18507023-18507243,18507347-18507473,18508463-185085...    34   0.13 
04_04_1600 + 34704527-34704758,34705393-34706777                       30   2.2  
06_01_1170 - 10002650-10004122                                         29   2.9  
12_02_1269 + 27462644-27463612                                         29   5.1  
03_06_0372 + 33446153-33446665,33446744-33446993,33447347-334475...    28   6.7  
03_01_0642 - 4702726-4703052,4703127-4703193,4703280-4703360,470...    28   6.7  
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965...    28   8.8  

>11_05_0034 +
           18507023-18507243,18507347-18507473,18508463-18508531,
           18508620-18508763
          Length = 186

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 19/90 (21%), Positives = 42/90 (46%)
 Frame = -2

Query: 457 FSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLXG 278
           F S  T             D+   +   +   RL Y+S++RG LE DL+L T+ ++++  
Sbjct: 42  FLSGFTTTTQQNSASTTTIDLSSDESRRRLINRLVYRSKQRGFLELDLVLGTWVEQHIHS 101

Query: 277 FNEXQTMMYDRLINSPSNDWDIFYWIVEKK 188
            +E       ++++  +   D++ W+  ++
Sbjct: 102 MDEANIRALLQVLDLENP--DLWKWLTSQE 129


>04_04_1600 + 34704527-34704758,34705393-34706777
          Length = 538

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 350 VMQSCFTFLQRLLFLNIIKRNLHVGCIHVV 439
           VM  C  F+QR L +N +++ + VGC+  +
Sbjct: 81  VMSGCILFIQRDLHINEVQQEVLVGCLSFI 110


>06_01_1170 - 10002650-10004122
          Length = 490

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 487 NALKNVQKVAFSSNTTNNMDTTYMEIPLYDV 395
           N L N+Q  +F SNT   ++  Y+E PL D+
Sbjct: 220 NFLLNLQSSSFVSNTFGQLERRYLERPLADM 250


>12_02_1269 + 27462644-27463612
          Length = 322

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -2

Query: 376 EKRKARLHYQSRKRGMLENDLLLSTFAKKYLXGFNEXQTMMYDRLINSPSNDWDIF 209
           E+R  RL +  R R ++EN  L    A+         Q  ++    N+PS DW  +
Sbjct: 115 ERRSYRLTFHRRHRALVENAYLPHVLAEGRAVTVRNRQRRLF---TNNPSADWSAY 167


>03_06_0372 +
           33446153-33446665,33446744-33446993,33447347-33447501,
           33447593-33447805,33447926-33448113,33448282-33448540
          Length = 525

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
 Frame = -3

Query: 654 SVKKGGRGFLLXNDHLYLFDLISKPFYSNDYRCLKLXKTXXXXXXXXILEPLTFLIMHSK 475
           SV   G   LL     YL   I K   ++ Y C+              +E L     HS 
Sbjct: 222 SVINSGVRDLLYGYRNYL-QAIHKQLDASMYVCVFEFDQEGGLPIKMNIEELNIAGFHSN 280

Query: 474 MSRKW-LFQVIPPTTWIQPTWRFLFMMLRNNNRWRNVKQDCIT 349
               W  F+ I P T I   +R   ++ ++NN   N KQ  +T
Sbjct: 281 PEENWGYFKFIAPVTLIGSPFRAKPVVDQDNNNTNNKKQPEVT 323


>03_01_0642 -
           4702726-4703052,4703127-4703193,4703280-4703360,
           4703582-4703718,4703936-4704143,4704664-4704891,
           4705310-4705450,4705538-4705794
          Length = 481

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +1

Query: 322 FLTFLFFAIGNAILLYVS----PAVVVSQHHKEESPCRLYP 432
           F+TFLF A G A+ +YV     PA+VV   H+++   R YP
Sbjct: 290 FITFLFQAYGRAVPVYVPVYLVPALVV---HRQDLLKRPYP 327


>03_02_0584 -
           9650996-9651488,9651630-9652049,9652129-9652158,
           9652201-9652287,9652657-9653669,9653832-9654854,
           9654946-9654969
          Length = 1029

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/62 (33%), Positives = 26/62 (41%)
 Frame = -2

Query: 541 NNMHLIXMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKA 362
           NN  L   L  + +N S N   N   VA  S  T   +         DVEK+QPLE +  
Sbjct: 319 NNAGLNLSLFGKHINESEN---NAPNVAVRSEPTKEPEEQSQRHVQNDVEKEQPLESQSV 375

Query: 361 RL 356
            L
Sbjct: 376 GL 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,937,845
Number of Sequences: 37544
Number of extensions: 278555
Number of successful extensions: 579
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)