Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O24
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31477| Best HMM Match : TPR_div1 (HMM E-Value=3.5e-34)             126   2e-29
SB_38228| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_29046| Best HMM Match : Alpha_kinase (HMM E-Value=8.4e-13)          29   5.2  
SB_21134| Best HMM Match : PAN (HMM E-Value=0.0002)                    29   5.2  
SB_48283| Best HMM Match : ABC-3 (HMM E-Value=2.4)                     29   5.2  

>SB_31477| Best HMM Match : TPR_div1 (HMM E-Value=3.5e-34)
          Length = 162

 Score =  126 bits (304), Expect = 2e-29
 Identities = 57/107 (53%), Positives = 77/107 (71%), Gaps = 1/107 (0%)
 Frame = -2

Query: 412 IPLYDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLXGFNEXQTMMYDRLINS 233
           IP Y V + +  E ++ARL YQSRKRGMLEN LLLSTFA ++L  F++     YD LIN 
Sbjct: 46  IPNYKVREDETTEMKRARLLYQSRKRGMLENGLLLSTFADRHLDEFDDDLLQQYDYLINQ 105

Query: 232 PSNDWDIFYWIVEKKPTRXEFDNEIMNLLXXHAKNEDQ-IALRQPDL 95
           P+NDWD++YWI E KPT  E+++ +M+++   AKNED+ +  RQPDL
Sbjct: 106 PTNDWDLYYWITENKPTPDEYNSPVMDMIKDFAKNEDRDVRTRQPDL 152


>SB_38228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/77 (27%), Positives = 37/77 (48%)
 Frame = -3

Query: 492 LIMHSKMSRKWLFQVIPPTTWIQPTWRFLFMMLRNNNRWRNVKQDCITNREKEEC*KTIF 313
           ++ H K+    L   +PP + I    ++  + LR NN  +NV    +  +   +  +T+F
Sbjct: 186 MLAHLKIRYLLLSPPLPPESGIS-AGKYKHISLRENNN-KNVMMIALQTKRLNKKDRTLF 243

Query: 312 YSALLRRSIXMVLMKXR 262
            SA L+  I   L+K R
Sbjct: 244 LSATLQLIIIATLVKIR 260


>SB_29046| Best HMM Match : Alpha_kinase (HMM E-Value=8.4e-13)
          Length = 1054

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -2

Query: 397  VEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLXGFNEXQTMMYDR 245
            + + +PL +  A+ +Y+ +     + D+L    A+ Y+  FN+ +  M DR
Sbjct: 900  INQDEPLARYVAKQYYEEQPIKQYQQDVLSQMTARSYVAQFNQ-KLFMLDR 949


>SB_21134| Best HMM Match : PAN (HMM E-Value=0.0002)
          Length = 518

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 489 IMHSKMSRKWLFQVIPPTTWIQPTWRFLF 403
           +   ++ R+    V PP T I P WRFLF
Sbjct: 139 VFAQQVPREESLYVFPPFTLIGPLWRFLF 167


>SB_48283| Best HMM Match : ABC-3 (HMM E-Value=2.4)
          Length = 745

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -2

Query: 211 FYWIVEKKPTRXEFDNEIMNLLXXHAKNEDQIALRQPDLPLKRKC 77
           +YW    +  R ++D+ I+NLL  ++  +  +      LP + KC
Sbjct: 81  YYWKWTNQSKRVQYDSFILNLLVKNSTFQTGVTAFSGSLPARFKC 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,317,938
Number of Sequences: 59808
Number of extensions: 352164
Number of successful extensions: 705
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)