Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O24
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-22|CAB55034.1|  119|Caenorhabditis elegans Hypothetical...    72   4e-13
AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec...    33   0.28 
AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph...    33   0.28 
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ...    28   6.0  

>AL117195-22|CAB55034.1|  119|Caenorhabditis elegans Hypothetical
           protein Y57A10A.29 protein.
          Length = 119

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 30/66 (45%), Positives = 47/66 (71%)
 Frame = -2

Query: 385 QPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLXGFNEXQTMMYDRLINSPSNDWDIFY 206
           + ++ ++ARL YQS+KRG+LEND+LL  FA++ L   +E +   YD+LIN    +WD+FY
Sbjct: 27  EKIDAKRARLLYQSKKRGILENDILLGDFAEQNLKKMSEPELKAYDKLINGEHMEWDLFY 86

Query: 205 WIVEKK 188
           ++  KK
Sbjct: 87  YLSNKK 92


>AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like
           receptor TOL-1 protein.
          Length = 1221

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -2

Query: 502 LNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRGMLE 323
           LN+S N ++      FSS     +D +Y ++    VE  Q  EKR A LH +      L 
Sbjct: 287 LNVSRNEIEAGNSSVFSSPELEMLDASYNKLDSLPVEWLQKCEKRIAHLHLEHNSIEQLT 346

Query: 322 NDLL 311
             +L
Sbjct: 347 GGVL 350


>AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll
           (drosophila) family protein 1 protein.
          Length = 1221

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -2

Query: 502 LNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRGMLE 323
           LN+S N ++      FSS     +D +Y ++    VE  Q  EKR A LH +      L 
Sbjct: 287 LNVSRNEIEAGNSSVFSSPELEMLDASYNKLDSLPVEWLQKCEKRIAHLHLEHNSIEQLT 346

Query: 322 NDLL 311
             +L
Sbjct: 347 GGVL 350


>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
            protein R10F2.1 protein.
          Length = 2779

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 481  LKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQP 380
            ++ +  VA+SS T  +  T Y+EI  +DV+   P
Sbjct: 2511 IEQITVVAYSSPTKQSKTTVYLEIGPFDVQPSLP 2544


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,873,991
Number of Sequences: 27780
Number of extensions: 286017
Number of successful extensions: 864
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)