Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_O24
(734 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 26 0.42
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 26 0.42
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 24 1.7
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 24 1.7
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 24 1.7
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 23 2.3
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 23 2.3
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 23 2.3
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 23 2.3
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 23 2.3
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 23 2.3
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 23 2.3
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 23 2.3
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 25.8 bits (54), Expect = 0.42
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 427 YPCCWW 444
YPCCWW
Sbjct: 486 YPCCWW 491
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 25.8 bits (54), Expect = 0.42
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 427 YPCCWW 444
YPCCWW
Sbjct: 539 YPCCWW 544
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 23.8 bits (49), Expect = 1.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 301 KC*VEDRFLTFLFFAIGNAILLYVSPAVVV 390
KC ++D ++FLF + NA+L+ +S V
Sbjct: 666 KCNIQD--MSFLFSQLYNALLILISTVYAV 693
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 23.8 bits (49), Expect = 1.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 301 KC*VEDRFLTFLFFAIGNAILLYVSPAVVV 390
KC ++D ++FLF + NA+L+ +S V
Sbjct: 756 KCNIQD--MSFLFSQLYNALLILISTVYAV 783
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -2
Query: 394 EKQQPLEKRKARLHYQSRKRGMLEND 317
++QQP ++++ + Q ++RG + ND
Sbjct: 837 QQQQPQQQQQQQQQQQQQQRGPMTND 862
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 487 NALKNVQKVAFSSNTTNNMDTTYMEIPLYDV 395
++L N K + +N NN +T Y ++ Y++
Sbjct: 83 SSLSNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 487 NALKNVQKVAFSSNTTNNMDTTYMEIPLYDV 395
++L N K + +N NN +T Y ++ Y++
Sbjct: 83 SSLSNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 487 NALKNVQKVAFSSNTTNNMDTTYMEIPLYDV 395
++L N K + +N NN +T Y ++ Y++
Sbjct: 83 SSLSNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 487 NALKNVQKVAFSSNTTNNMDTTYMEIPLYDV 395
++L N K + +N NN +T Y ++ Y++
Sbjct: 83 SSLSNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 487 NALKNVQKVAFSSNTTNNMDTTYMEIPLYDV 395
++L N K + +N NN +T Y ++ Y++
Sbjct: 83 SSLSNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 487 NALKNVQKVAFSSNTTNNMDTTYMEIPLYDV 395
++L N K + +N NN +T Y ++ Y++
Sbjct: 83 SSLSNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 487 NALKNVQKVAFSSNTTNNMDTTYMEIPLYDV 395
++L N K + +N NN +T Y ++ Y++
Sbjct: 83 SSLSNNYKYSNYNNYNNNYNTNYKKLQYYNI 113
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 23.4 bits (48), Expect = 2.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 15 EQQATNAIITNQRNKFILLTLHFR 86
+QQ I+TNQ K IL T + +
Sbjct: 983 QQQQQQTIVTNQAGKSILQTANIK 1006
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,093
Number of Sequences: 438
Number of extensions: 3193
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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