Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O24
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51040.1 68418.m06327 expressed protein                             38   0.005

>At5g51040.1 68418.m06327 expressed protein
          Length = 188

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
 Frame = -2

Query: 403 YDVEKQQPLEKRKA--RLHYQSRKRGMLENDLLLSTFAKKYLXGFNEXQTMMYDRLINSP 230
           +D++      KR+   RL Y+S++RG LE DL+L  + ++ +   +E        ++N  
Sbjct: 59  FDIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLE 118

Query: 229 SNDWDIFYWIVEKK---------PTRXEFDNEIMNLLXXHAKNEDQIALRQP 101
           +   D++ W+ E++         P       ++M  L  HA  E + A  QP
Sbjct: 119 NP--DLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQP 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,643,912
Number of Sequences: 28952
Number of extensions: 251786
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)