Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O21
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   5.5  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    25   7.2  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   7.2  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   7.2  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   9.5  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   9.5  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    25   9.5  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 186 ESPLPISQPSTGKLIEILNEDPNVHYMD 103
           + P P+SQPS  +L + L E    H  D
Sbjct: 5   DPPAPLSQPSASRLQKYLLESAEKHAYD 32


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 141 EILNEDPNVHYMDGICE 91
           EI+ +DPN+  M  ICE
Sbjct: 120 EIMKKDPNMSLMQDICE 136


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -3

Query: 520 VPI*PRLQHSSHTRCYKKY*IKMSVYIGGFICALVLAALVIVWIAYC 380
           VPI   +    H++C++KY         G +  L+   L+I  + YC
Sbjct: 705 VPIPKDVDEKGHSKCHRKY---------GHVIELICTLLLIFVVIYC 742


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 289 LALERTDSSYAVCPILCIEGFLTSHVPL 372
           L + ++D   ++CP+LC    L  + PL
Sbjct: 717 LHVNKSDEIRSICPLLCERANLPKNTPL 744


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 487  HTRCYKKY*IKMSVYIGGFICALV-LAALVIVWIAYCMFIRE 365
            H R Y     ++SV++  F C +  L   +I+W +YC F ++
Sbjct: 985  HYRSYVHGNSRISVFLESFSCPVPGLEEKIIMW-SYCKFCKK 1025


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -3

Query: 394  WIAYCMFIRERAKSENLQYTISDIQHRNYLFSQEQETPVKEKKLTAGIFVMPSRHKQTED 215
            ++ Y    R R   + L      ++      S E   P+K K +TAG F   +R  ++ D
Sbjct: 921  FLQYKSLCRARDVRDQLANLCERVEIELVTNSSESLDPIK-KAITAGYFSNAARLDRSGD 979

Query: 214  DYR 206
             YR
Sbjct: 980  SYR 982


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 186 ESPLPISQPSTGKLIEILNE 127
           E+P+ +SQP T  L+E+L +
Sbjct: 132 ENPINLSQPKTRILLEVLKQ 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,624
Number of Sequences: 5004
Number of extensions: 45413
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)