Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O21
         (543 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_41150| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)         28   5.7  
SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_12499| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  

>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 151  PCARL*YRQRTLR--XNPVCCGNRPRFAYGAKASRKFPQSASSLSPEFLAL 297
            PC    Y+ R +R    PV CGN+P   Y  + S K     +  SP + A+
Sbjct: 1030 PCYAAIYQARVMRQYTKPVLCGNQPSPCYAMRQSTKPVVCGNLPSPWYAAI 1080


>SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1368

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -1

Query: 234 AISKPRTITATDRIXPESPLPISQPSTGKLIEILNEDPNVHYMDGICEGSX*NGPSQR 61
           A SKP  +    R+ P +PL IS  S    + +++++  V   D  CE     G S++
Sbjct: 374 APSKPSNMRVVVRVRPPNPLEISNNSGASSVRVMDQNVLVFDPDEECEAINFPGASRK 431


>SB_41150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 92  SHIPSM**TLGSSLRISINFPVLGCDIGSGLSG 190
           +H+ S   TLGS ++  I  PV+G ++G GL G
Sbjct: 17  THMESGIHTLGSGIQNPIGEPVMGRNLGEGLQG 49


>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 373 IRERAKSENLQYTISDIQHRNYLFSQEQETPVKEKKLTAGIFVMPS 236
           + E++  E   Y IS I  ++YL  Q  + P  EK+   GIF  PS
Sbjct: 77  VMEKSFPEFYDYYISVITEKSYLNGQNMQDPFGEKR---GIFDFPS 119


>SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)
          Length = 1172

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 388 LSKR*PVRPIQERI*NHRYK-HSFLFNIFYNSVC 486
           LS+R P+R + + I  H+Y  H+F  + F+  +C
Sbjct: 64  LSERNPIRRLSKNIVEHKYPLHAFTISSFFYLLC 97


>SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 431  KTTDINTHFYSIFFITACV 487
            KTT ++THFY++F  + C+
Sbjct: 1234 KTTSLSTHFYALFQASYCL 1252


>SB_12499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 470

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 467 ILNKNECLYRWFYMRSCIGRTGHRLDSLLH-VHKGTCEVR 351
           IL K EC++R  Y   CI R  ++ + +L  ++K  C  R
Sbjct: 126 ILEKCECIFRLLYKCECIFRLLYKCECILRLLYKCECIFR 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,408,367
Number of Sequences: 59808
Number of extensions: 363762
Number of successful extensions: 871
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)