Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O21
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine rece...    29   1.6  
AF016450-9|AAB65987.3|  295|Caenorhabditis elegans Serpentine re...    29   2.2  
AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z47357-9|CAI46580.1|  563|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z47357-8|CAA87425.3|  601|Caenorhabditis elegans Hypothetical pr...    27   6.6  

>U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 28 protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +2

Query: 326 VRYCVLKVF*LRTFPYEHAVGYPNDDQCGQYKSAYKTTDINTHFYSIFFITACVRRVLQT 505
           +  CV  V  LR F   HA+ Y +D     ++S+    D N ++Y+  F + C   +   
Sbjct: 67  IHQCVTAVIRLRAF--YHAIVYASDPCAILFQSSQCFFDGNLYYYTNLFSSFCCFSLFLD 124

Query: 506 RLY 514
           RL+
Sbjct: 125 RLF 127


>AF016450-9|AAB65987.3|  295|Caenorhabditis elegans Serpentine
           receptor, class t protein69 protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 454 MSVYIGGFICALV--LAALVIVWIAYCMFIRERAKSENLQYTI 332
           + +Y+  F C  +  LA L+I+++ YC  I+  AKS  ++ +I
Sbjct: 163 IEIYLS-FPCLAISYLAYLIIIFLIYCKNIKSTAKSRKIEISI 204


>AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical
           protein T08E11.1 protein.
          Length = 649

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 413 QYKSAYKTTDINTHFYSIFFITACVRRV 496
           Q+K+A+  TD+N   + + F+ A  RRV
Sbjct: 577 QFKAAFHETDVNNSIFEVNFLGAPRRRV 604


>Z47357-9|CAI46580.1|  563|Caenorhabditis elegans Hypothetical
           protein ZK1128.6b protein.
          Length = 563

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 346 LQYTISDIQHRNYLFSQEQETPVKEKKLT-AGIFVMPSRHKQTEDDYRNRP 197
           L+  IS   H         + P+ +  L  AG++V PS  K ++ DY  RP
Sbjct: 396 LEVNISPSLHSGTPLDVSVKAPLAKDVLNLAGVYVPPSFDKLSDADYSTRP 446


>Z47357-8|CAA87425.3|  601|Caenorhabditis elegans Hypothetical
           protein ZK1128.6a protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 346 LQYTISDIQHRNYLFSQEQETPVKEKKLT-AGIFVMPSRHKQTEDDYRNRP 197
           L+  IS   H         + P+ +  L  AG++V PS  K ++ DY  RP
Sbjct: 434 LEVNISPSLHSGTPLDVSVKAPLAKDVLNLAGVYVPPSFDKLSDADYSTRP 484


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,681,026
Number of Sequences: 27780
Number of extensions: 261584
Number of successful extensions: 605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)