Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_O20
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S... 200 9e-53
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac... 199 2e-52
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19... 52 5e-08
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 28 0.90
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom... 27 1.2
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 27 1.6
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 26 2.7
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 4.8
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 4.8
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|... 25 8.4
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 25 8.4
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 8.4
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 25 8.4
>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 200 bits (488), Expect = 9e-53
Identities = 93/135 (68%), Positives = 107/135 (79%)
Frame = -3
Query: 421 LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRRAKK 242
L+KKR FR F YRGV+L+QLLD+ EQL++L H RGL ++KLR+AK
Sbjct: 15 LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKS 74
Query: 241 EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 62
EAP NEKP VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP
Sbjct: 75 EAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKP 134
Query: 61 VKHGRPGIGATHSXK 17
KHGRPGIGATHS +
Sbjct: 135 TKHGRPGIGATHSSR 149
>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 153
Score = 199 bits (486), Expect = 2e-52
Identities = 93/135 (68%), Positives = 107/135 (79%)
Frame = -3
Query: 421 LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRRAKK 242
L+KKR FR F YRGV+L+QLLD+ EQL++L H RGL ++KLR+AK
Sbjct: 14 LRKKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKT 73
Query: 241 EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 62
EAP NEKP VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP
Sbjct: 74 EAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKP 133
Query: 61 VKHGRPGIGATHSXK 17
KHGRPGIGATHS +
Sbjct: 134 TKHGRPGIGATHSSR 148
>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
S19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 52.0 bits (119), Expect = 5e-08
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = -3
Query: 211 VKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 65
+KT +R+ I+P MVG+ ++NGK++ V+I +MIGH LGEF+ T K
Sbjct: 50 IKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 27.9 bits (59), Expect = 0.90
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 244 KEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 143
K A P++KP + THL +++I VG + ++
Sbjct: 60 KRARPSQKPPLRSTHLPHLLIFALFVGKHIACFH 93
>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -1
Query: 483 GRCFLILLSNKQET-WLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSWN 331
G+C + +N ++ + S+ + + +TG +++ISS +C + N +N
Sbjct: 123 GQCSKWISANVPNAEFVSVSSTSQAAALASKDITGTIVAISSELCAVENQFN 174
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 149 NADN*TDHLGNDDHVSQVSLHDLWLLIR 232
N N T H+ ++ V +V++HD+W I+
Sbjct: 18 NVPNETKHIFDEISVKEVAVHDIWKRIQ 45
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 2.7
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = -3
Query: 175 EMVGSIVGIYNGK-TFNQVEIKPEMI-----GHYLGEFSV-TYKPVKHGRPGIGATHSXK 17
E+ + VG+YNGK F + + P+ + H L E ++ KP++ PG+ TH
Sbjct: 23 EITDATVGVYNGKIVFLEKSMTPKTLEEAKSHHLLKEATIHKLKPLQFMFPGLIDTH--- 79
Query: 16 VHSAQ 2
+H+ Q
Sbjct: 80 IHAPQ 84
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 145 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 59
N +TF+ E E + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = -1
Query: 456 NKQET-WLRST-KPSRKSVFSGSSLTGEL 376
NKQET L++T +P+ K + GSS TG++
Sbjct: 39 NKQETAGLQTTSRPTAKQLVGGSSWTGKI 67
>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 462 LSNKQETWLRSTKPSRKSVFSGSSLTGEL 376
+S K TW R + KS S SSL G++
Sbjct: 317 ISTKSITWSRKARRISKSQTSVSSLEGQM 345
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 471 LILLSNKQETWLRSTKPSRKSVFSGSSLTGELISISSLIC 352
L LLSN + + S + R V+ SL L+S+ + IC
Sbjct: 195 LPLLSNTIKRFDESNEEDRHGVYCVLSLMENLLSVDNSIC 234
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 292 LKRKPMALVKKLRRAKKEAPPNEKPEIVKTHL 197
L R+P + +K R KEA PN I++ L
Sbjct: 10 LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -3
Query: 250 AKKEAPPNEKPEIVKTHLRNMIIV----PEMVGSIVGIYNGKTFNQVEIKPEMIG 98
A E P+ P+++ + L + + P + GS+ +Y FN V++ + G
Sbjct: 192 AASEISPSSSPQLLTSFLPSGSVSNPSSPYLQGSVGALYEADAFNFVDVMSQASG 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,120
Number of Sequences: 5004
Number of extensions: 35681
Number of successful extensions: 106
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -