Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O20
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)             231   3e-61
SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041)          28   4.9  
SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)                    28   4.9  
SB_27203| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   4.9  

>SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score =  231 bits (564), Expect = 3e-61
 Identities = 106/138 (76%), Positives = 121/138 (87%)
 Frame = -3

Query: 430 DETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRR 251
           D  +K+KR FRKFTYRGVDLDQLLD+ +EQLMEL+         RGLKRKP+AL+K+LR+
Sbjct: 7   DAQIKRKRTFRKFTYRGVDLDQLLDLSHEQLMELVCCRQRRRFTRGLKRKPLALMKRLRK 66

Query: 250 AKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVT 71
           AKKEA P EKPE+VKTHLRNMIIVPEM+GS+VG+YNGKTF QVEIKPEMIGHYLGEFS+T
Sbjct: 67  AKKEAAPMEKPEVVKTHLRNMIIVPEMIGSVVGVYNGKTFTQVEIKPEMIGHYLGEFSIT 126

Query: 70  YKPVKHGRPGIGATHSXK 17
           YKPVKHGRPGIGATHS +
Sbjct: 127 YKPVKHGRPGIGATHSSR 144


>SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041)
          Length = 988

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -1

Query: 492 NSAGRCFLILLSNKQETWLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSWN*CM 322
           N   RC  +LL    ++  RS    +K +    S TG+L   S   CP ++ W  C+
Sbjct: 770 NLEARCRELLLQGLVQSTRRSYASGQKRLIEFCSQTGKLHPSSGSPCP-ADEWTLCL 825


>SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)
          Length = 924

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/62 (25%), Positives = 35/62 (56%)
 Frame = +2

Query: 80  ELSEVMADHLRLDFNLVKSFSVVNADN*TDHLGNDDHVSQVSLHDLWLLIRRSLFLGATQ 259
           +LSE++     LDF+   + SV++ D+ T    N+ H S  ++ +L  +   ++ LG+ +
Sbjct: 769 DLSELIVPPPMLDFDDGDASSVLSTDSFTTSHTNNTHNSTTTVDELLQVCWSAVLLGSVE 828

Query: 260 LL 265
           ++
Sbjct: 829 VV 830


>SB_27203| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 527

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -1

Query: 429 TKPSRKSVFSGSSLTGELISISSLICPMSNSWN*CMPVRAGGSLVVLNV 283
           TKP   S  SGS+  G L   SS  C  S+S +  + V  GG + V  V
Sbjct: 179 TKPDAMSASSGSASAGRLYGNSSW-CSTSSSVSEYLQVDLGGVMTVSGV 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,444,275
Number of Sequences: 59808
Number of extensions: 270981
Number of successful extensions: 623
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)