Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O19
         (465 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18050.1 68417.m02686 ABC transporter family protein contains...    30   0.67 
At1g34000.2 68414.m04216 light stress-responsive one-helix prote...    30   0.89 
At1g34000.1 68414.m04215 light stress-responsive one-helix prote...    30   0.89 
At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containi...    29   2.0  
At2g39830.1 68415.m04892 LIM domain-containing protein contains ...    28   2.7  
At1g73970.1 68414.m08567 expressed protein                             28   3.6  
At5g28270.1 68418.m03430 hypothetical protein similar to At2g121...    27   4.7  
At5g16360.1 68418.m01912 NC domain-containing protein contains P...    27   4.7  
At4g39440.1 68417.m05581 expressed protein  ; expression support...    27   4.7  
At5g43670.1 68418.m05337 transport protein, putative similar to ...    27   8.3  
At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containi...    27   8.3  
At2g06750.1 68415.m00753 hypothetical protein similar to At5g282...    27   8.3  

>At4g18050.1 68417.m02686 ABC transporter family protein contains Pfam
            profile: PF00005 ABC transporter; similar to
            multidrug-resistant protein CjMDR1 GI:14715462 from
            [Coptis japonica]
          Length = 1281

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +1

Query: 25   TLDXIFRWCWWFRLEGAGECLLR 93
            TLD  FRWC  F    A EC LR
Sbjct: 1216 TLDEDFRWCLCFSCHSAHECKLR 1238


>At1g34000.2 68414.m04216 light stress-responsive one-helix protein
           (OHP2) contains similarity to photosystem II 22 kDa
           protein GI:6006279 from [Arabidopsis thaliana]
          Length = 145

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 118 RCTSSRGPFHRGRRTSTVREPQEP 189
           RC+ + GP  R     T+REPQ+P
Sbjct: 42  RCSQTEGPLRRPSAPPTLREPQKP 65


>At1g34000.1 68414.m04215 light stress-responsive one-helix protein
           (OHP2) contains similarity to photosystem II 22 kDa
           protein GI:6006279 from [Arabidopsis thaliana]
          Length = 172

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 118 RCTSSRGPFHRGRRTSTVREPQEP 189
           RC+ + GP  R     T+REPQ+P
Sbjct: 42  RCSQTEGPLRRPSAPPTLREPQKP 65


>At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 685

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = -3

Query: 247 SDGKTAQESAVLKNVGTENEALEVRGQYSYVDLDGKVHETTYTADENGFHP 95
           S G    E+A ++++  +    ++ G YS+++L+GKVHE  + AD+   HP
Sbjct: 527 SVGGRWDEAAEVRDMMNKKGMKKIPG-YSWIELEGKVHE--FLADDKS-HP 573


>At2g39830.1 68415.m04892 LIM domain-containing protein contains
           Pfam profile PF00412: LIM domain
          Length = 503

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 139 PFHRGRRTSTVREPQEPHFRYRR 207
           PFH G   S+   P EP ++YRR
Sbjct: 135 PFHGGLNPSSFIPPYEPSYQYRR 157


>At1g73970.1 68414.m08567 expressed protein 
          Length = 803

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +2

Query: 89  SGGMETIFVSGVRRLVDLSIEVDVRVLSANLKSLIFGTDVLQYSRFLGCFAIRSFKAKAV 268
           S G +++ +S +R   +  IE   ++L +N   +   T   +    L CFAI   +  +V
Sbjct: 291 SSGAQSLEISKLRNSAEKRIEFVAQILVSNGNVVTLPTTQRE-GPLLKCFAIALARCGSV 349

Query: 269 TLKADIVKCL 298
           +  A ++ CL
Sbjct: 350 SSSAPLLLCL 359


>At5g28270.1 68418.m03430 hypothetical protein similar to At2g12100,
           At2g05450, At1g45090, At2g16180, At2g06750
          Length = 574

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -3

Query: 463 NEFGRPMTVGIVPSSSKPSPDQTFIMKS 380
           N + RP  +G + ++ K +P+ TF+++S
Sbjct: 53  NAYSRPEYIGQIAAALKDTPEMTFLLES 80


>At5g16360.1 68418.m01912 NC domain-containing protein contains Pfam
           domain, PF04970: NC domain
          Length = 283

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 14  FVRSLWTXFFVGVGGLDLRELGNVCSGGMETIFVSGVRR 130
           F+ S       G+GGL L E GN C G +   +  GVR+
Sbjct: 220 FISSTVKYVVPGIGGLALAEYGNYCIGRL--FYDIGVRK 256


>At4g39440.1 68417.m05581 expressed protein  ; expression supported
           by MPSS
          Length = 443

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +2

Query: 110 FVSGVRRLVDLSIEVDVRVLSANLKSLIFGTDVLQYS 220
           F   VRRLV L I+V + VLS  + +L+  T +LQ S
Sbjct: 383 FPKAVRRLVQLYIQVSISVLSV-VCALLSCTTLLQLS 418


>At5g43670.1 68418.m05337 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 794

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 141 FPSRSTYEYCPRTSRASFSVPTFFNTADSWA 233
           FP+ S  EY P  SR S S  T    A SW+
Sbjct: 104 FPTYSAVEYSPLPSRQSGSNTTTPTAAASWS 134


>At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 852

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 110 KWFPSLRSRHSPAPSSLNHQH 48
           K  PSL  +HSP+P+S++  H
Sbjct: 43  KLLPSLPQQHSPSPASVSATH 63


>At2g06750.1 68415.m00753 hypothetical protein similar to At5g28270,
           At2g12100, At2g05450, At1g45090, At2g16180
          Length = 435

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -3

Query: 463 NEFGRPMTVGIVPSSSKPSPDQTFIMKS 380
           N + RP  +G + ++ K +P+ TF+++S
Sbjct: 53  NAYSRPEYIGQIAAALKDTPELTFLLES 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,374,373
Number of Sequences: 28952
Number of extensions: 170552
Number of successful extensions: 584
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)