BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P01_pT_O17 (469 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_06_0120 + 31804301-31804412,31804525-31804631,31804714-318047... 31 0.35 10_02_0174 - 6202334-6204922 30 1.1 03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 27 7.5 04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508... 27 10.0 02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545... 27 10.0 >03_06_0120 + 31804301-31804412,31804525-31804631,31804714-31804756, 31806069-31806187 Length = 126 Score = 31.5 bits (68), Expect = 0.35 Identities = 15/49 (30%), Positives = 22/49 (44%) Frame = -2 Query: 306 WKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTKRFPW 160 W+++++ L N H H + PP Y Y+ IR K FPW Sbjct: 43 WEKITYAGIVTCTLLAAYNLSKGHP--HFDEPP--AYPYLHIRNKEFPW 87 >10_02_0174 - 6202334-6204922 Length = 862 Score = 29.9 bits (64), Expect = 1.1 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Frame = -2 Query: 240 AHQEEHHERPPFVPYEYMRIRTKRFPW-GDGQ-KSLFHNPHVNALPSGYEDDH*ITII 73 A E H+ Y M + W GDG S+ +NPH+ A GY+ D ++II Sbjct: 346 ASSESKHKPKWLDDYSAMITQAVLTGWFGDGMANSVMYNPHLVARQFGYDQDFPVSII 403 >03_06_0108 + 31708713-31709079,31709258-31709822,31709933-31710015, 31710231-31710319,31710486-31710559,31710654-31710704, 31710807-31710883,31711454-31712031,31712388-31712555, 31713364-31713417,31713456-31713467,31713554-31713715 Length = 759 Score = 27.1 bits (57), Expect = 7.5 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +3 Query: 84 FSGHLHNRWEGHSHEGCGKGTSVHHPMGNALYECACI 194 + GH H+ +GH+ +G G HH G +CA I Sbjct: 153 YGGHGHH--QGHAQDGGAVGGDPHHG-GGGFLQCAVI 186 >04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880, 16552038-16552076,16553151-16553272,16553531-16553677, 16554097-16554186,16554274-16554398,16554567-16554772, 16554951-16555075,16555528-16555722,16556295-16556337, 16556762-16557267,16558198-16558570,16559772-16560062, 16560132-16561101,16561196-16561892,16562378-16562658, 16562731-16563400,16563860-16564034,16565103-16565659 Length = 2204 Score = 26.6 bits (56), Expect = 10.0 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +1 Query: 145 LLSITPWETLCTNAHVFIRYKWRTFMVFLL 234 LL+ TPW+ +C N +V + R+ + F L Sbjct: 946 LLNATPWDDICDNDNVDLSAIGRSLLQFSL 975 >02_05_0941 + 32953065-32953089,32954252-32954406,32954486-32954587, 32955089-32955140,32955237-32955349,32955542-32955610, 32955942-32956049,32956517-32956661,32957245-32957476, 32957567-32957853,32957951-32958087,32958520-32958667, 32959464-32959595,32960239-32960367,32960707-32960834, 32960911-32961075,32961462-32961587,32962088-32962161, 32962285-32962534,32962875-32963054,32963128-32963361, 32964771-32964840,32965065-32965177,32965403-32965511, 32965639-32965688,32965823-32965889,32966131-32966203, 32966393-32966448,32966729-32966831,32967377-32967458, 32967717-32967779,32967918-32967977,32968356-32968448, 32968561-32968623,32968699-32968797 Length = 1363 Score = 26.6 bits (56), Expect = 10.0 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +3 Query: 147 SVHHPMGNALYECACIHKVQMADVHGVPLGELSRHLAFREQ 269 ++H+ L C+ K Q DV P +L+ LA R+Q Sbjct: 1231 NIHYLSEEVLRLQECLSKYQRTDVGSTPQADLAHLLASRDQ 1271 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,734,155 Number of Sequences: 37544 Number of extensions: 236040 Number of successful extensions: 521 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 519 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 521 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 943260316 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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