Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_O17
         (469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6100| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.029
SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)            31   0.36 
SB_9335| Best HMM Match : 7tm_1 (HMM E-Value=8.1e-05)                  31   0.36 
SB_53564| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_28914| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)                   27   5.9  
SB_54058| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  

>SB_6100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -2

Query: 168 FPWGDGQKSLFHNPHVN 118
           FPWGDG   LFHN H N
Sbjct: 2   FPWGDGDPPLFHNKHTN 18


>SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)
          Length = 284

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 15/53 (28%), Positives = 19/53 (35%)
 Frame = -2

Query: 246 YLAHQEEHHERPPFVPYEYMRIRTKRFPWGDGQKSLFHNPHVNALPSGYEDDH 88
           Y  H  E     P   Y Y R  T R P+ D +   +H P    +P      H
Sbjct: 174 YATHYAEQRPHDP-THYAYHRAYTGRIPYADHRGYRYHGPETRRMPQALHRPH 225


>SB_9335| Best HMM Match : 7tm_1 (HMM E-Value=8.1e-05)
          Length = 226

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +1

Query: 82  NLVVIFITAGKGIHMRVVEKGLLSITPWETLCTNAHVFIRYKWRT--FMVFLLVS*VGI 252
           +L++++I A     +  +E GL S TP    CT+      YK+RT  F  FLLV+ + +
Sbjct: 136 SLLLLWIFAWMTFSVPFIEHGLRSTTPVTRSCTSMFTHGGYKFRTYYFPGFLLVTIISL 194


>SB_53564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 34  KSLHVLQPHFLKQNYCN 84
           + + V+QPHF+ +N+CN
Sbjct: 89  QEIGVMQPHFVNRNHCN 105


>SB_28914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 218 NVRHLYLMNTCAFVQSVSHG 159
           +V HL  +N C FV  VSHG
Sbjct: 821 HVAHLVQVNECYFVNQVSHG 840


>SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)
          Length = 420

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 150 QKSLFHNPHVNALPSGYEDD 91
           Q +LF+ PH N LPSG+  +
Sbjct: 131 QNNLFNIPHENELPSGFHSE 150


>SB_54058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 306 WKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFV 202
           WK +  F    A+ +     YL  +E H  +PPFV
Sbjct: 13  WKFLDVFRKEIAVTVFQSRHYLEFEEAHQTQPPFV 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,289,958
Number of Sequences: 59808
Number of extensions: 260734
Number of successful extensions: 638
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)